Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5800 102 6e-17 seq16595 86.0 4e-12 seq5726 84.2 2e-11 >seq5800 Length=18681 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | | || ||||||||||||||||| || |||||||| ||| Sbjct 3423 GATAAGGAGGGTATTCCGCCAGATCAGCAGAGACTTATCTTTGCCGGGAAACAACTTGAA 3482 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || || | || || ||||| ||||||||||| |||||||||||| | || | Sbjct 3483 GATGGAAGGACACTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTCCTT 3542 Query 22047 CGTTTACGAGGAGGATATTAA 22067 ||| | || || ||| |||| Sbjct 3543 CGTCTTCGTGGTGGAATTTAA 3563 >seq16595 Length=7721 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | || ||||| || || || ||||||||| |||| ||| | | Sbjct 1729 AATGCAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 1788 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || ||||| || ||| ||||| ||||| | || | |||| Sbjct 1789 AGATACCATTGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGGATTCCCCCAGACCA 1848 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || |||||||| || || || || ||| | || |||| ||||| || Sbjct 1849 GCAGCGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTATAA 1908 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 || || ||||| ||||||||||| | || | ||| | || || || | |||| Sbjct 1909 CATCCAAAAGGAGTCTACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGTTTTTAA 1963 >seq5726 Length=29179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| |||| || |||||||| ||| | || ||| | Sbjct 26915 CAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATC 26856 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | || | ||| || || || || || || | || | | Sbjct 26855 CTCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGA 26796 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| | || || || || || |||||||| |||||| ||| | || ||||| Sbjct 26795 CCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTA 26736 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || ||||||||||| ||||||||| |||| | || || |||| || Sbjct 26735 CAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357612652438360