Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6046 86.0 6e-12 >seq6046 Length=110076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||||| ||| | || ||||| | ||| ||||| ||||||||||| || || Sbjct 46219 ACATGAGCAATCATGCATGTCAAGAGAGCATAAGACGCAATATTAAAAGGAACCCCTAAC 46278 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||||||| | || | ||| |||| |||||||| | ||| || | |||||||| || Sbjct 46279 CCCATGTCTGCTGAACGCTGGTACATTTGACAGGATAACTCGCCATTTGCTACATAGAAC 46338 Query 20366 TG 20367 || Sbjct 46339 TG 46340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440725416445600