Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5800 141 2e-28 seq14764 140 8e-28 seq16595 100 7e-16 >seq5800 Length=18681 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | ||||| || || | || |||||| |||||||| |||||||| Sbjct 1961 TCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGC 1902 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || |||| ||||| || |||||||||| ||||||||| ||||| Sbjct 1901 AAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGG---TCTGG 1845 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 | || ||||| || || ||||| || | || ||||| || || | |||| ||| Sbjct 1844 GGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTC-- 1787 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || ||||| |||||||||||||| || |||||| Sbjct 1786 -TCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATT 1733 >seq14764 Length=84029 Score = 140 bits (154), Expect = 8e-28 Identities = 148/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || |||||||| || || || || ||||||| ||| |||||||||||| Sbjct 2790 TCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAG 2849 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| || ||| ||| ||||||||||| || ||||| || | ||| ||||| Sbjct 2850 ATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTG 2909 Query 288403 TCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 ||||| | | || | ||| |||||||| ||||| ||||| ||||| || || || | Sbjct 2910 TCTATGG--TGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCA 2967 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 2968 CGAAGATTTGCAT 2980 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || || |||| ||| || || |||||||| || || || Sbjct 1721 TCCACCACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1780 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | || || || || || |||| | ||| || | || Sbjct 1781 CAAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGG 1840 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| ||||| || || |||||||||| |||||||| || || | || |||| || Sbjct 1841 GATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTC---TC 1897 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||||||||| || || ||||||||||||||||||||||| Sbjct 1898 AACCTCCAAGGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| ||| || || ||||| || || || || Sbjct 1950 CCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCA 2009 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||||||||| ||||||| | ||| || ||||||| Sbjct 2010 AGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTG---ATCTGGG 2066 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || | ||| || || || || | | || | ||| Sbjct 2067 GGAATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGG--TGTCTGAACTCT 2124 Query 288424 --ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || |||||||||||||| || ||||| Sbjct 2125 CAACCTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 >seq16595 Length=7721 Score = 100 bits (110), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || || |||||||| ||||| || || Sbjct 1956 CCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCC 1897 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| || || | || || || || || |||| |||||| || |||||| Sbjct 1896 AAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGG---TCTGGG 1840 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || |||||||| || || | || || || || || | ||| |||| Sbjct 1839 GGAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTC--- 1783 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | || || |||||||| |||| |||||||| |||||||||||| Sbjct 1782 TCCACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177880885456520