Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5726 141 9e-29 seq16595 102 8e-17 seq5800 93.3 4e-14 seq14764 82.4 8e-11 >seq5726 Length=29179 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| |||||| | ||||| |||||||| || || ||||||||||| || Sbjct 26684 ACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGC 26743 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | |||||||| || || ||||| ||||||| || || ||||| || || Sbjct 26744 GAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGG 26803 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||| ||| || | || ||| || || || Sbjct 26804 AATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| |||| ||| || || || | ||||| ||||| || |||||||| Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || ||||| ||||| ||||| || | ||| || | || Sbjct 1942 AAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATC 1883 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| || ||| |||| | ||||||||||| || ||||| || || || || Sbjct 1882 CTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATC 1823 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | ||||| | ||||| || | || | ||| Sbjct 1822 CTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGT 1763 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || ||||| || || || || || |||||| Sbjct 1762 CTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 >seq5800 Length=18681 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || || ||||| || || | |||||| | || || ||||| || || Sbjct 1930 GTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCA 1871 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 1870 GCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTA 1811 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| || || || | ||||| || |||||||| | ||| Sbjct 1810 ACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTC 1751 Query 64427 TTTACGAAAATTTGCATTTTA 64447 || ||||| |||||||||||| Sbjct 1750 TTGACGAAGATTTGCATTTTA 1730 >seq14764 Length=84029 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | ||||| || || || || || ||||||||||| || Sbjct 1949 ACCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGC 2008 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||||||||| || || ||| | || | || |||||| || || || Sbjct 2009 AAGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2068 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || ||| || ||| || | || || || || Sbjct 2069 AATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAAC 2128 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | ||| || ||||| |||||||| Sbjct 2129 CTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498911945989600