Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5726 127 1e-24 seq14764 104 2e-17 seq16595 95.1 9e-15 seq5800 93.3 3e-14 >seq5726 Length=29179 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || |||||||| || || || || || ||||||||||| | Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | |||||| || ||| | || | ||| |||||||| |||| Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| | || ||| | || || || || ||| || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACC 26864 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||| ||| |||||||| ||||| || ||||| || || || ||||| || Sbjct 26865 TCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| | || || || || |||||||| |||||||| ||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||| ||| || || ||| | |||||||| || || || |||| Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| || ||| |||| || | ||||| || || | | || || Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || ||||| || || ||||| || || |||||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| |||||||| || || || || || ||||||||||| Sbjct 1950 CCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCA 2009 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | ||||| || || | ||||| | ||| || || ||| Sbjct 2010 AGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 2069 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||| || |||| ||| | || || || || | | || || Sbjct 2070 ATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACC 2129 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || || || || ||||| || || || ||||||||| Sbjct 2130 TCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCATA 2177 >seq16595 Length=7721 Score = 95.1 bits (104), Expect = 9e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 ||||||| | |||||| |||||| | |||||||| || || || ||||||||||||| Sbjct 609 CGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCT 550 Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 |||| || ||| |||| || | || || || || | | || || || | |||| Sbjct 549 TGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTAA 490 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| || || || ||||| || || |||||||| Sbjct 489 TGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| ||||| || ||||| ||||| ||||| || || || | || || | || Sbjct 1932 TGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTC-CATCCTCAAGCTG 1874 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||||||||| ||||| ||||| || ||||| || ||| || Sbjct 1873 CTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTT 1814 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | | || ||| | || || ||||| | || || || ||||||||||| || || || Sbjct 1813 GGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGT 1754 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 1753 CAATGTCTTGACAAATATCTGCAT 1730 >seq5800 Length=18681 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || || ||||| ||| || | | | || |||| ||| Sbjct 1936 TGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTGT 1877 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 1876 TTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTA 1817 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || || | || || |||||| | | || || || | || || ||||| || || Sbjct 1816 GTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTG 1757 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || || || |||||||| || Sbjct 1756 AGAGTCTTGACGAAGATTTGCATTTT 1731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356880900401900