Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5800 125 7e-24 seq14764 120 3e-22 seq16595 104 2e-17 >seq5800 Length=18681 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || |||||||| ||| | | ||||| ||| ||||||||||| ||| Sbjct 1930 GTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCA 1871 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||| || || || || || || |||||||| ||| || ||| Sbjct 1870 GCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTA 1811 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||| || | ||||||||| |||| || | ||||||||||| ||||| Sbjct 1810 ACGTTGT-CAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGT 1752 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 1751 CTTGACGAAGATTTGCAT 1734 >seq14764 Length=84029 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||||||||| ||||| ||| | | || || ||| ||||| || ||||| Sbjct 2784 GTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTGCTTTCCT 2843 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || |||||||| || || || || || ||||| ||| || ||| Sbjct 2844 GCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGTTTTG 2903 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | |||||||||||||| || | || || ||||| || || Sbjct 2904 ACGTTG-TCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGTAAGGGT 2962 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || || ||||| Sbjct 2963 TTTCACGAAGATTTGCAT 2980 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || ||||||||||| ||| || ||| ||| || ||||| || ||| Sbjct 1752 GTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTACCA 1811 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||| | |||||| || || || || || |||||||| ||||||| ||| Sbjct 1812 GCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTCGTCTTC 1871 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||||| ||||| || || | ||| | ||| || || || ||||| Sbjct 1872 ACGTTG-TCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCTGTGAGAGT 1930 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1931 CTTGACGAATATCTGCAT 1948 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| || || || |||||||| | Sbjct 1950 CCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCA 2009 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||||||||| || ||||||| | ||||||||| || || Sbjct 2010 AGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 2069 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| | | || || | | || | |||||| | |||||| || Sbjct 2070 ATTCCCTCCTTGTCC-TGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAAC 2128 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || ||||| || || || || ||||| Sbjct 2129 CTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 >seq16595 Length=7721 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || |||||||||||| ||||||| || |||||||| || || || || |||||| Sbjct 607 TCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTG 548 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || ||| || |||| |||| || | |||||| | ||||||||| |||| || | Sbjct 547 TCTTGGATCTTGGTTTTGACGTTG-TCAATGGTGTCAGAACTCTCGACCTCGAGAGTAAT 489 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || ||||| || || || ||||| Sbjct 488 GGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474803359201600