Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14764 125 6e-24 seq5800 116 3e-21 >seq14764 Length=84029 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| || ||||| || || || ||| | || ||| || Sbjct 2772 ACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCT 2831 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||||||| | ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 2832 AGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGG 2891 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | |||| |||||| ||| ||||||||||||||| | || || Sbjct 2892 ATCTTGGTTTTGA-CGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTT 2950 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || ||||| || || ||||||||| Sbjct 2951 ACCGGTAAGGGTTTTCACGAAGATTTGCATC 2981 >seq5800 Length=18681 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||| | | || || || || |||||||| || |||||||| || ||| Sbjct 1963 ATTCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCG 1904 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || ||| | ||||| || || ||||| || Sbjct 1903 GCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGG 1844 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || || | | || | || | ||| |||||| ||| Sbjct 1843 GGAATCCCTTCCTTGTCTTGGATCTTA-GTCTTAACGTTGTCAATGGTATCGGAACTCTC 1785 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| | ||||||||||| ||||| || || || |||||||| Sbjct 1784 GACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451340224306400