Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3507 102 1e-16 >seq3507 Length=58984 Score = 102 bits (112), Expect = 1e-16 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGC-TCGTGGGATAAGAAACA 10263 ||||||| ||| ||||||||| | | || ||||||||| ||| ||| ||||||||| Sbjct 8460 AGTAAAGATCACCCTCTTTGTGGGTGTGAATTACACAATCGGATCGCGGG-TAAGAAACA 8518 Query 10264 CAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGA 10323 || ||||| | ||||| |||| |||| ||||| ||||| ||| || ||| Sbjct 8519 CATGTCAGCAAATAACCATTCTCGAGTTGGTTGTCATCGAGGAAGGATCCGTCTGACTGA 8578 Query 10324 TCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAG 10383 || || || || || ||| || || ||||| | || || ||||| || | || ||| Sbjct 8579 TCAACTGTTCCAGATTCGAGCTTTCCAGCACAGGTTGAGCAAGCACCTGCCCTACATGAG 8638 Query 10384 TAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 || || ||||| || ||||| || || ||||| || ||||| |||||| Sbjct 8639 TATGGCAGATCAATCCCAGCTTCCTCGGCTGCATCAAGGATGTAACAATCGTC 8691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621212298449600