Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8005 86.0 8e-12 >seq8005 Length=94463 Score = 86.0 bits (94), Expect = 8e-12 Identities = 193/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || ||||||||||||||||||| || ||||| | || ||||| | ||||||||| | Sbjct 12434 TCAAAGCCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCC- 12376 Query 12849 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 | | | | || | || | |||| | || || || |||||||| |||| || || | Sbjct 12375 -TCCTCCAATTCCAGTACCTCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAA 12317 Query 12907 TACACGGTTGATTTT-CACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 |||| || ||||| | | | ||| ||| | || |||||||| || |||||| Sbjct 12316 TACAAGGAGCATTTTCCTTTGCCTTCTTGAAA-AGGTCACGCACTCTAGATGCTCCGACA 12258 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTC 13024 || |||||||| || ||||| | | | ||| || | || || || ||| || ||| Sbjct 12257 CCAACAAACATTTCAACAAATTCTGAACCAGAA-ATGGAGAAAAATGGAACGCCGGCTTC 12199 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || || || || || || ||||| || || |||||| Sbjct 12198 TCCAGCAATAGCCTTAGCTAGCAGAGTCTTTCCAGTTCCTGGT 12156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612607338314400