Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14764 143 6e-29 seq16595 129 1e-24 seq5726 118 2e-21 seq5800 107 5e-18 >seq14764 Length=84029 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| ||||| ||||| | ||||||||| || | ||| | |||||| Sbjct 2769 AGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCT 2828 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| |||||||| | ||| ||||| || || |||||||||| || Sbjct 2829 TCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 2888 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| || | |||||||| | || || || | ||||| ||| Sbjct 2889 TGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTC 2948 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| || ||||| Sbjct 2949 TTACCGGTAAGGGTTTTCACGAAGATTTG 2977 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||||| |||| ||||| ||||||||||| Sbjct 1728 CGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTA 1787 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || || || | | ||||||||| || || ||| Sbjct 1788 CGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCT 1847 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||| || | |||||| | | || || ||||| Sbjct 1848 TCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAG 1907 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || |||||||| || || || || || Sbjct 1908 GTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTG 1945 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| |||| |||||| ||||| | ||| | |||||||| ||||| Sbjct 1974 TGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCAAGCTGT 2033 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || ||||| | | |||||| || || |||||| || |||||||||||| Sbjct 2034 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 2093 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || || | |||||||| | || || ||||| || || ||||| || ||| Sbjct 2094 GTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTTCCAGTG 2153 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| Sbjct 2154 AGAGTCTTGACGAAGATTTG 2173 >seq16595 Length=7721 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| ||||||||||||| ||| || |||||||| || | |||||| Sbjct 1941 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCC 1882 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || | |||||||||||| || ||| || || ||| Sbjct 1881 TCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCC 1822 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||| |||| | || || ||||| || || ||| Sbjct 1821 TGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTC 1762 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 1761 TTCCCAGTCAATGTCTTGACAAATATCTG 1733 >seq5726 Length=29179 Score = 118 bits (130), Expect = 2e-21 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || |||||||| ||||| |||| |||||| ||||| | ||| | |||||||| || || Sbjct 26709 TGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCTTCAAGTTGT 26768 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||| |||||||| || ||||| || ||||||||| || || ||||| Sbjct 26769 TTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG 26828 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| |||||| | | ||| || || | || || || || || || Sbjct 26829 GTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCTGTT 26888 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTT 199635 || |||||||| || || || |||||| Sbjct 26889 AGGGTTTTCACGAAGATCTG---CATTTT 26914 >seq5800 Length=18681 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || ||||| |||||||| || | |||||||||||| | ||| Sbjct 3550 CGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTC 3491 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || ||||| ||||| || | |||||| || || ||| || Sbjct 3490 CTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGGAATACCC 3431 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||||||||| Sbjct 3430 TCCTTATCCTGAATCTT 3414 Score = 96.9 bits (106), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || || || |||| |||||||| || | || | ||||| Sbjct 1945 AGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCC 1886 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || |||||||| | |||||| ||||| || ||| ||||| || Sbjct 1885 TCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCT 1826 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||| || | | || || || | || || || Sbjct 1825 TGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTT 1766 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 || || |||||||| || || || ||||| ||||||| Sbjct 1765 TTGCCGGTGAGAGTCTTGACGAAGATTTG---CATTTTA 1730 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||||||||| ||||| || || | |||||||||||||| | || || |||||| | || Sbjct 3455 ACTTATCTTTGCCGGGAAACAACTTGAAGATGGAAGGACACTTGCTGACTACAACATTCA 3514 Query 200994 GAAAGAGTCTACTCTTCACCTTGT 201017 ||| |||||||||||||| ||||| Sbjct 3515 GAAGGAGTCTACTCTTCATCTTGT 3538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177149187161780