Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14764 84.2 2e-11 seq16595 82.4 5e-11 >seq14764 Length=84029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || || | || | ||| |||||||| || || || ||||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | ||| || || | || || ||||| |||||||| | || Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| | | || |||| ||| | ||| ||||||| || || || Sbjct 2874 ATTCCTTCTTTGTCTTGGA-TCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGAC 2932 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| ||||| || | ||||| |||||||| ||||| Sbjct 2933 TTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 >seq16595 Length=7721 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || |||||||| ||||| ||| |||| || | || || || ||||| Sbjct 1920 TCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAA 1861 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGT 39647 || ||||||||||| || | ||| | || || || || | | | || || |||| | Sbjct 1860 ATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATC-CTGAATCTTGGTCTTAACATT 1802 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| ||| ||||| ||||| ||||| || || || || || || || || Sbjct 1801 ATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGAC 1742 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 1741 AAATATCTGCAT 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346872833248220