Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5726 143 3e-29 seq7113 125 7e-24 seq5800 125 7e-24 seq14764 95.1 1e-14 >seq5726 Length=29179 Score = 143 bits (158), Expect = 3e-29 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || || || |||||||| ||| | || || || || Sbjct 26914 AAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCC 26855 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | || | | |||| || |||| ||||| || |||||||| | | Sbjct 26854 TCTGACACCATCGACAATG--TCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAG 26797 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| || ||||||| ||| || ||||| || || || | || || ||| || | Sbjct 26796 ACCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATT 26737 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| |||||| |||| || ||||||||||| || |||||||| || Sbjct 26736 ACAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq7113 Length=4078 Score = 125 bits (138), Expect = 7e-24 Identities = 399/607 (66%), Gaps = 19/607 (3%) Strand=Plus/Minus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCT-CGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||||| || |||||||| ||||||| | || | || || | |||||| ||| || Sbjct 617 AAACAAGCGAAATCGCAATG-AAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGT 559 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 || |||||||| | ||||||||||| ||||| || || | | |||||| || || || Sbjct 558 TAATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTTCCGGAGAA 499 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||| | || || || |||||||| | | | || | ||| | | Sbjct 498 GAAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCAN---ATTCGGCACCAT---- 446 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGG 133129 ||||||| | | ||||| ||||| || |||||| || || || || ||||| || | Sbjct 445 --CGATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTT-ACACAAGGGATTGTTTCAATTG 389 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 | || || || ||| | | ||| | |||||| || | |||| |||| Sbjct 388 CACGGAATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAAT 329 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAA-GCACCGCGCCTCG 133248 ||||||| || || | ||| || ||||||||||| ||||||||||| ||| || || || Sbjct 328 ACATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA-CGGGCTTCA 270 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 || || | |||| |||||| | | |||||||| || || || || Sbjct 269 GAGACTTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAA 210 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAG--CGC 133365 || || || || || || ||||| | |||||||| | || | | ||| ||| | Sbjct 209 GCAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTC 150 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||| | ||| || | || || || || || || | ||||| || ||||| || Sbjct 149 TCCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCA 90 Query 133426 GCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAAT-CACAAACCGGCG 133484 ||||| |||||||| ||| || | | ||||| || ||||| || || || | | | Sbjct 89 GCTTTCTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCT 30 Query 133485 GGGGTTT 133491 ||| ||| Sbjct 29 GGGTTTT 23 >seq5800 Length=18681 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || ||||| |||||||| || || |||| |||||| Sbjct 1731 AAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGT 1790 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | |||| |||| || |||| ||||| || || |||||| | || Sbjct 1791 TCCGATACCATTGACAACG-TTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGA 1849 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | || | ||| || |||||||| || || | |||||||| |||||| Sbjct 1850 CCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTA 1909 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| || ||| | || || || | || || ||| | ||||| || Sbjct 1910 CAATATCCAGAAAGAATCAACACTCCACCTTGTACTCCGTCTCAGAGGTGG 1960 >seq14764 Length=84029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || || ||| | || || ||| | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||||| ||| || | ||||| |||||||||||| | || || Sbjct 2116 GACACCATTGATAATGTTAAAACAAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 2057 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || |||||||| || || | || || || || |||||| Sbjct 2056 CAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAAC 1997 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || |||||||| || || Sbjct 1996 ATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCG 1962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || ||||| |||| |||||| | Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| || |||| |||||||| |||||||| | || || Sbjct 2920 GACACCATAGACAACG-TCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 2862 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || || || || || | || || || ||||||||| Sbjct 2861 GCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAA 2802 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| || | || || || | || || ||||| ||||| || Sbjct 2801 CATTCAAAAAGAGTCAACTCTCCACCTTGTTCTCCGTTTAAGAGGTGG 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499439171545600