Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8005 114 2e-20 seq12100 84.2 3e-11 >seq8005 Length=94463 Score = 114 bits (126), Expect = 2e-20 Identities = 227/325 (70%), Gaps = 16/325 (5%) Strand=Plus/Minus Query 15933 CGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTG 15990 ||||| ||||| || | |||| |||||| |||||| | |||| ||||||||||| | Sbjct 12473 CGATTAGTTGCAGCAACAACAATAATACCGGTGTTTCCCT--CAAAGCCATCCATCTCAG 12416 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 16048 ||| |||||| || | || ||||| | ||||||||| || | | | | |||| || Sbjct 12415 TCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCAGTACC 12358 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 16108 | |||| | ||||| |||||||| ||||||| ||||| || || || |||||| Sbjct 12357 TCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAATACAAGGAGCATTTTCCTT 12298 Query 16109 AG-CGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCAC 16165 | | ||| ||| || || || ||| || | || || |||||||||||||| || || Sbjct 12297 TGCCTTCTTGAAA-AGGTCACG--CACTCTAGATGCTCCGACACCAACAAACATTTCAAC 12241 Query 16166 AAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 16224 ||| | || | ||| || | || || || || | ||| || ||||| || | Sbjct 12240 AAATTCTGAACCAGAA-ATGGAGAAAAATGGAACGCCGGCTTCTCCAGCAATAGCCTTAG 12182 Query 16225 CGAGAAGAGTCTTACCCGTACCTGG 16249 | || |||||||| || || ||||| Sbjct 12181 CTAGCAGAGTCTTTCCAGTTCCTGG 12157 >seq12100 Length=20663 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 112588 ||| || | |||| | |||| | | |||||| || |||||||| ||||| |||||| | Sbjct 17114 TGTTACCACAAACTTGAACAAAATAATTGATGAGAACTTTTACCCTGTTGAAACTGCTAG 17173 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 | ||| || ||||| || | ||||||||| | || ||||||||||| || ||| || Sbjct 17174 AAGATCAAACATGAGGCATAGACCAATTGGTATTGGAGTCCAAGGTCTTGCAGATACTTT 17233 Query 112649 CATTCT 112654 ||| || Sbjct 17234 CATACT 17239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619831926084800