Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8005 116 4e-21 >seq8005 Length=94463 Score = 116 bits (128), Expect = 4e-21 Identities = 223/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 9240 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9297 ||||| || || || | |||| |||||| |||||| | |||| ||||||||||| | Sbjct 12473 CGATTAGTTGCAGCAACAACAATAATACCGGTGTTTCCCT--CAAAGCCATCCATCTCAG 12416 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355 ||| ||| || || | || ||||| | ||||||||| || | | | | |||| || Sbjct 12415 TCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCAGTACC 12358 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | |||| | ||||| |||||||| ||||||| ||||||||||| || |||||| Sbjct 12357 TCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAATACAAGGAGCATTTTCCTT 12298 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | | || || || || || || || || |||||||||||||| || ||||| Sbjct 12297 TGCCTTCTTGAAAAGGTCACGCACTCTAGATGCTCCGACACCAACAAACATTTCAACAAA 12238 Query 9476 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | || | ||| || | || || || || | ||| || ||||| || || | Sbjct 12237 TTCTGAACCAGAA-ATGGAGAAAAATGGAACGCCGGCTTCTCCAGCAATAGCCTTAGCTA 12179 Query 9535 GAAGAGTCTTACCCGTACCTGG 9556 | |||||||| || || ||||| Sbjct 12178 GCAGAGTCTTTCCAGTTCCTGG 12157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589115445661600