Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3507 86.0 8e-12 >seq3507 Length=58984 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || || || || || ||||| ||| ||||| ||||| || || | || ||||| || Sbjct 8676 CTTGATGCAGCCGAGGAAGCTGGGATTGATCTGCCATACTCATGTAGGGCAGGTGCTTGC 8617 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || | ||||||||| || || || ||| || || ||||||||||| ||| ||||| Sbjct 8616 TCAACCTGTGCTGGAAAGCTCGAATCTGGAACAGTTGATCAGTCAGACGGATCCTTCCTC 8557 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTT-CTGACCTGTGTTGCTTATCCTACAAGCGA 172087 ||||| | ||| | || | | | || || ||||| |||||| |||| || | ||| Sbjct 8556 GATGACAACCAACTCGA-GAATGGTTATTTGCTGACATGTGTTTCTTACCCGCGATCCGA 8498 Query 172088 TTGTGT 172093 |||||| Sbjct 8497 TTGTGT 8492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609501500493600