Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4985 93.3 5e-14 >seq4985 Length=23263 Score = 93.3 bits (102), Expect = 5e-14 Identities = 179/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 153717 TTGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGG-TAGTATGCAAAGGTT 153775 |||| || ||||| |||||| |||| |||||||| ||| || | | | || || || Sbjct 7178 TTGAAGCCACCTG---GTGAGTTGGGAGCTGATATTGTTGTGGGGTCATCT-CAGAGATT 7123 Query 153776 TGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTA 153835 ||| |||||||||| ||||| |||||||||||||| ||||| || || | | |||| Sbjct 7122 TGGGGTTCCTATGGGCTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCTCAAGAGTA 7063 Query 153836 TAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAA 153893 ||||||| || || || ||| || | | || ||| || ||| ||||| Sbjct 7062 TAAGAGATTAATGCCAGGAAGAGTTATTGGTGTTAGT--GTTGATTCGTCTGGTAAGCCT 7005 Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || | | || | ||||| || ||||| || || | || || || || || || Sbjct 7004 GCTCTTCGTATGGCGATGCAGACGAGGGAGCAACACATTCGTAGGGATAAGGCTACTAGC 6945 Query 153954 AACATCTGCACAGCTCAGG 153972 ||||||||||| ||||||| Sbjct 6944 AACATCTGCACTGCTCAGG 6926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578363239625600