Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14764 194 4e-44 seq5800 161 2e-34 seq5726 149 1e-30 seq16595 140 7e-28 >seq14764 Length=84029 Score = 194 bits (214), Expect = 4e-44 Identities = 169/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| ||||| |||||||||||||| ||||| ||||||||||| | |||||||| Sbjct 2771 AACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTC 2830 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| ||||||||||| | ||||| || ||||| ||||| |||||||||||||| Sbjct 2831 TAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTG 2890 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||| || |||||||| ||||| || ||||| || || | ||||| Sbjct 2891 GATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTT 2950 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 2951 ACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || ||||||||||| || | ||| | |||||||| Sbjct 1740 ACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCC 1799 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || || || | | || ||||| || || || ||||| |||||||| Sbjct 1800 AGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGG 1859 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| |||||||||||||| || || || || | ||| | ||||||| Sbjct 1860 ATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTTT 1919 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||| || ||||| | ||||| Sbjct 1920 CCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| || || || |||||||| |||||||| | |||||||| ||||| Sbjct 1974 TGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCAAGCTGT 2033 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| ||||| | | || || ||||| ||||| || || ||||| ||||| ||| Sbjct 2034 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 2093 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||||||||| ||||| || || || | ||||| |||||||| || Sbjct 2094 GTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTTCCAGTG 2153 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 2154 AGAGTCTTGACGAAGATTTGCAT 2176 >seq5800 Length=18681 Score = 161 bits (178), Expect = 2e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | |||||||| || || || ||||| || |||||||| |||||||| || Sbjct 1955 TCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGT 1896 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||| || || |||||||| | || ||||||||||| ||||| || Sbjct 1895 GCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCC 1836 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| |||||||| || ||||| || || || || Sbjct 1835 TTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAG 1776 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | || || || || | ||| || ||||| | |||||||| Sbjct 1775 AGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTT 1732 >seq5726 Length=29179 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || || || || |||||||| || ||||| | |||||||| || || Sbjct 26709 TGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCTTCAAGTTGT 26768 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || |||||||||||||| ||||| ||||| |||||||| || || Sbjct 26769 TTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG 26828 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || |||||||| || ||| || || ||||| | || || ||||| Sbjct 26829 GTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCTGTT 26888 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 | ||||| ||||| | ||||||| Sbjct 26889 AGGGTTTTCACGAAGATCTGCATTT 26913 >seq16595 Length=7721 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| ||||| ||||| || || ||||| || | || | ||||| || Sbjct 1938 ACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCA 1879 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || || || | || || |||||||| ||||| || || || || ||| Sbjct 1878 AGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGA 1819 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || |||||||| || || || ||||| || | ||||| ||||| Sbjct 1818 ATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTC 1759 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | |||||| Sbjct 1758 CCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || || || || |||||||| | ||||| || ||||| ||||| ||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || |||||||| ||||||||||| ||||| || || || || ||| Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| ||||| | |||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107813584559780