Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5726 100 2e-16 seq14764 98.7 6e-16 >seq5726 Length=29179 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||| |||| || ||| ||||| ||||| || || | Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || || ||||||||||| || || || ||||| |||||| | || Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||||| || | ||||| ||| || || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGAC--AT--TGTCGATGGTGTCAGAGGATTC 26860 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || | |||||||||||| || || || || ||||| ||||||||||| || Sbjct 26861 AACCTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| |||| || ||||| ||||| || || | ||| | || |||| || Sbjct 1967 AACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTC 2026 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| || | | ||||| ||| | || | ||||||||||| Sbjct 2027 AAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 2086 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| ||||| | | |||| || || |||||| || | ||| || | Sbjct 2087 AATCTT-TGTTTTA---ACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAG 2142 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| ||||||||||| || ||||| |||||| Sbjct 2143 TCTTTCCAGTGAGAGTCTTGACGAAGATTTGCATA 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324169347575520