Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7113 206 3e-48 seq14392 96.9 4e-15 >seq7113 Length=4078 Score = 206 bits (228), Expect = 3e-48 Identities = 593/905 (66%), Gaps = 17/905 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || ||||||| || ||||||||||| ||||| || | |||||| || | Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 18729 TTCCAT-AAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 |||||| ||||||| |||||| ||| ||| | ||| | |||| | | | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | |||||| || ||||||| ||| ||| |||| | |||||| ||||| |||| || Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | || || |||||||| | ||||| ||| || | ||||| ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACGA 668 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | || | |||| || | | ||| | | | | ||||| || | Sbjct 667 TCCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAACAAGCGA 608 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 |||| ||||| || || || |||| || ||||| || || |||||||| || |||| Sbjct 607 AATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCCGGGCA 548 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCT 19086 | | || | |||||| | |||||| || | |||| || ||| || ||||| || ||| Sbjct 547 TTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAGAAAATCCCT 489 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || ||||||| || ||||| || | ||| | || |||||| Sbjct 488 TCAACACAAGCGAAAGCAATTAATCTTT---CANATTCGGCACC------ATCGATCCAT 438 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || || ||||| |||||||| || ||||| || || | | |||| Sbjct 437 CTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAATAAT 378 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | | | | ||||| | || | |||| | | | |||||||| ||| Sbjct 377 CGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTTCGGAA 318 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || |||||||| | ||||| | | || | Sbjct 317 TGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTTGAATC 258 Query 19327 TCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | | ||| || | | | ||||||| ||| || |||||| ||| ||||| || Sbjct 257 TCTTTCATGAAACGATTAG-CAAGATTTTCAAGAACAATACCATCAGAAGCAGCAAAGAA 199 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---ATGTATTCCAATCATT 19442 || | || || |||| ||||||| |||||| || |||| |||| | ||||| Sbjct 198 AGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAATGGCG 139 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 | ||||| || | ||| |||||||| | ||||| || || || || ||||| || || Sbjct 138 TAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCTTGTA 79 Query 19503 CATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTT 19562 ||| | ||| || | | | ||||| || ||||| ||| ||||| | | |||||| | Sbjct 78 CATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTTTCTGT 19 Query 19563 AAGAA 19567 |||| Sbjct 18 GAGAA 14 >seq14392 Length=19752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || ||||||||||| || | || | |||| | ||||| |||||||||||| || ||| Sbjct 18664 TCGACAGTAAACTTGATAGCATCAGCAGCTGCTCGTGTTCTTAAATAATACATGCCTGTC 18605 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTT-C 47095 || ||||| | |||| |||||||||||| | ||| | ||| || | |||| Sbjct 18604 TTCAAACCCTTATTCCAGGCATAGAAATGCAGAGAAGTGAGTTTTCCGAAATTGGGTTGA 18545 Query 47096 TGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 | ||||||||||| || ||| || ||||| ||||| || | |||||| ||||| Sbjct 18544 TNCCATATGAATATTCAGGCTTTGGCTTTGATCTATAAAACATCCGCGATCAGCAGCCAT 18485 Query 47156 ATCTAAAATAA--CCCTTTGTGGTATCTCCCATACTGT 47191 ||| || ||| || ||| ||||||||| || || Sbjct 18484 ATC--AACTAAGTTTCTCTGTTTTATCTCCCAGACAGT 18449 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | || ||| |||| ||| ||| Sbjct 7350 CCTCCTTGATCAACATACTTTGCAGTATCATTGAACACCCGTAGCATAGGGATAATGCCA 7291 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || ||||| |||||| | || | || || | || Sbjct 7290 TTTGATGTCCCATTCGTACCACGTATATAGCTTCCAGTGGCACGGATGTTGTGGACAGAG 7231 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || || |||||||| ||| Sbjct 7230 ACACCAATGCCTCCGGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATT 7171 Query 48540 CCTTCTATACTATCATCTATCATA 48563 ||||| || ||||| ||| ||||| Sbjct 7170 CCTTCAATGCTATCCTCTTTCATA 7147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561284326917600