Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7113 178 2e-39 >seq7113 Length=4078 Score = 178 bits (196), Expect = 2e-39 Identities = 540/825 (65%), Gaps = 29/825 (4%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 ||||||||| || ||||||| |||| || || |||||||| || |||| || ||| || Sbjct 907 TTTTTGATACTCCCCAACTC-TCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCA 849 Query 36943 TTTCCATAA-AATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTC 37001 |||||| ||||||| ||||| | | ||| | | |||| | | | | Sbjct 848 ATTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCC 789 Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 | | ||||| ||||||||||| ||||||| || ||||| ||| |||| ||||| | | Sbjct 788 AACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACT 729 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | ||||| | |||||| | ||| |||| ||| || |||||||| || Sbjct 728 AAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACG 669 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTT-----AAATATTTAAACAATAAAC 37176 || ||| |||| ||||| | |||| | | | | | ||||| Sbjct 668 ATCCCTTGAAT-----CTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAAC 614 Query 37177 ATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATC 37236 | || ||||| ||||| | |||||||||| || ||||| || || || ||||||| Sbjct 613 AAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATC 554 Query 37237 CTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAAGAAA 37295 | |||||||| || | |||||||| ||| || || | ||| ||| ||| || |||||| Sbjct 553 CGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAAA 495 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || |||||||| || || || | | | | | || | | || Sbjct 494 ATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCANA-----TTCGGC----ACCATCG 444 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||||| || | ||| || || || || ||||| |||||||||||||| Sbjct 443 ATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGG 384 Query 37416 AAGAGAAAGt-ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || | | || |||||| || ||| |||| || || || | || | | |||||| Sbjct 383 AATA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACAT 325 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 ||| || || || |||||||| || || || || || ||||| | |||||||| | Sbjct 324 TTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGAC 265 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 ||||| || || | || | ||||| | |||||| ||| || |||||| ||| || Sbjct 264 TTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGC 205 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC---ATTTGATAATTTTTTCCA 37651 ||||||||||||||| | | || |||||| |||||| | || | || | | ||| Sbjct 204 AAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCA 145 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||||| ||| | ||||||||| || | ||||| || Sbjct 144 ATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591448019333600