Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14764 149 5e-31 seq5800 111 1e-19 seq16595 105 5e-18 >seq14764 Length=84029 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | ||| | || || || || |||||||| || ||||| ||||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | |||||| ||||| || |||||||| || ||||| || ||| Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || ||| || | |||| ||||| || | || ||| Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || ||||| | ||||| || || || ||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| || | ||| | |||| |||| ||| Sbjct 1746 TGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGC 1805 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| || || || || || ||||| || ||||| ||||| Sbjct 1806 TTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTC 1865 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || | |||| ||| || || || Sbjct 1866 GTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCTGTG 1925 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 1926 AGAGTCTTGACGAATATCTGCAT 1948 >seq5800 Length=18681 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | ||| | || | || || || |||||||| || |||||||| |||| Sbjct 1962 TTCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGG 1903 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | |||| || | || || || || || |||||||||||||| || || | Sbjct 1902 CAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGG 1843 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||| || || || || | || | || || || | || | Sbjct 1842 GAATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGA 1783 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| | ||||||||||| | ||| || || || || ||||| Sbjct 1782 CCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1734 >seq16595 Length=7721 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || ||||| || || ||||| || | || | |||| || | ||| Sbjct 1932 TGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGC 1873 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||||||||| || || || ||||| || || ||||| ||||| || Sbjct 1872 TTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTTG 1813 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | ||||| || | || | || || || || Sbjct 1812 GTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTC 1753 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||||||||| Sbjct 1752 AATGTCTTGACAAATATCTGCAT 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395711689690380