Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14764 107 1e-18 seq16595 95.1 9e-15 >seq14764 Length=84029 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| || || || |||||||||| ||| | || | || || Sbjct 1968 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCA 2027 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || ||||| |||| | ||| ||||| | ||||| ||||||||||| | Sbjct 2028 AGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 2087 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | | ||||| ||| ||||||| ||||| || ||| Sbjct 2088 ATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTT 2147 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || || || ||||| Sbjct 2148 CCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 >seq16595 Length=7721 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || || ||||||| | | || | || || | ||||||||| ||||| Sbjct 1921 CTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAA 1862 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || || | ||||| |||||||| || |||||| || ||| Sbjct 1861 AATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATT 1802 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||||||||||| ||||| || || || ||||| || || || Sbjct 1801 ATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGAC 1742 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 1741 AAATATCTGCAT 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380392828280820