Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq3507 102 9e-17 >seq3507 Length=58984 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||||||||| ||||| |||||||| || | || || ||||| || | ||||| Sbjct 8682 TACATCCTTGATGCAGCCGAGGAAGCTGGGATTGATCTGCCATACTCATGTAGGGCAGGT 8623 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||| || | ||||| ||||| |||| ||||| || || || || ||| ||| Sbjct 8622 GCTTGCTCAACCTGTGCTGGAAAGCTCGAATCTGGAACAGTTGATCAGTCAGACGGATCC 8563 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || || ||||| |||| ||||| | ||||| ||||||||||| || | Sbjct 8562 TTCCTCGATGACAACCAACTCGAGAATGGTTATTTGCTGACATGTGTTTCTTACCCGCGA 8503 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGA 158549 |||||||| ||| | || |||| || Sbjct 8502 TCCGATTGTGTAATTCACACCCACAAAGA 8474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546943791794400