Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4985 87.8 2e-12 >seq4985 Length=23263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||||||||| || || || || || || | ||| || ||||| || || || Sbjct 6928 TGAGCAGTGCAGATGTTGCTAGTAGCCTTATCCCTACGAATGTGTTGCTCCCTCGTCTGC 6987 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | ||||| || || || |||| || ||| | || ||| | Sbjct 6988 ATCGCCATACGAAGAGCAGGCTTACCAGACGAATCAACACTAAC--ACCAATAACTCTTC 7045 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || || ||||||||||| | | || || ||||| |||||||||||||| || | Sbjct 7046 CTGGCATTAATCTCTTATACTCTTGAGAAGTAGCCAAGAAAGCAGCATGAGGACCACCAT 7105 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTA-CCTACAGCAATATCAAATCCCCACTCA 139553 | |||||||||| ||||| || || | | | || ||| |||||||| |||| ||||| Sbjct 7106 AGCCCATAGGAACCCCAAATCTCTG-AGATGACCCCACAACAATATCAGCTCCCAACTCA 7164 Query 139554 CCTACAGGTTGCATTAACA 139572 | ||||| || | |||| Sbjct 7165 C---CAGGTGGCTTCAACA 7180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578149154096800