Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq10716 107 3e-18 seq21925 98.7 1e-15 seq348 98.7 1e-15 seq3507 96.9 5e-15 >seq10716 Length=64212 Score = 107 bits (118), Expect = 3e-18 Identities = 247/371 (67%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || || | ||| || ||| |||| ||| |||||| |||||||| || ||||| || || Sbjct 1206 GCCGGTAAAACGTGGGAATTTTCCGGGTGAAAATTGTCATTTGGGCCGTATAGATTGGTG 1147 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGAT---GGTATGCCTGACACATCTTG 47102 |||||| || || |||| | || || ||| | || ||||| ||||||||| Sbjct 1146 GGCATCCCCGAAATTGCATCCCA---ATTGTGTTGAATTCGATAAGCCTGGCACATCTTG 1090 Query 47103 ATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATT 47162 || |||||||| || ||||| || || | ||||| | || || |||||||| | | Sbjct 1089 ATTCCAGCAATTTTGGCAATGGCGTACCACTCATTGGTGGGCTCCAGAGGACCGGTTAAA 1030 Query 47163 AGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGA 47222 || ||| ||| ||||| || || || ||||| ||||| || |||||| Sbjct 1029 AGCGCAGATTCAGGAATCGGTTGAGGGGCAAACTTAGGGTAAATACAGGAGGATCCAAGA 970 Query 47223 AATAAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTTGATTGAATCATC 47282 || | |||||| | |||||| | | || | ||||| ||| | ||| ||| Sbjct 969 AAGAGAAGTTTTTGGACACCATGGATGAACGATGAGTTAATGACGTTGGTTTGTATCTGG 910 Query 47283 AAATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAATACCACCCACCTTT 47342 | |||| | ||||||| ||||||| ||||| ||| || || || || || Sbjct 909 AGATTAATGGAAATGAAGTCAGCGGGATAGGTGTTATTTGCATGGATTCCGCCTACTTTA 850 Query 47343 GCAGCAGCAAG 47353 ||||| ||||| Sbjct 849 GCAGCCGCAAG 839 >seq21925 Length=4909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 32657 GGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCATCCAAGAACGA 32715 || || | |||||| ||||||| | ||||||||| || |||||| ||||||| || || Sbjct 4591 GGGTACGAAACACATGTGAGCAAATAACCCTTCTCCA-TTTGATTTTCATCCAGAAAAGA 4533 Query 32716 CTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACC 32775 ||| ||| || || || ||| | | | || || ||||||| ||| |||||||| Sbjct 4532 TCCATCCGATTGATCCACAGTTCCACTTTCGAGCTGCCCAGCACAAGTTGAGCAGGCACC 4473 Query 32776 TGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTG 32835 ||| | || ||||| || |||| ||| ||| ||| |||| |||||||||||| Sbjct 4472 TGCCCTGCATGAGTACGGTAGCTCAAGCCCCGCTTGCTCGGCTGAATCAAGGATGTAACA 4413 Query 32836 ATCATC 32841 |||||| Sbjct 4412 ATCATC 4407 >seq348 Length=9639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 32632 AGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTC 32691 ||| | ||| |||||||| ||| ||| || | ||||||||||||||||||||| | Sbjct 4976 AGTCTTAATAGTAACATCACTAGTAGGAATAGCTATACAAGTGAGCACAAACCCTTCCGC 5035 Query 32692 AATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751 || || ||||| |||||||| ||| || |||||| || | ||| ||||| || Sbjct 5036 TATCTGCTCATCGTCCAAGAAACTCTGGTCTGATTGGTCCACACTTCCACTAACAATTTT 5095 Query 32752 ACCTGCACAAGATGAACAGGCACCTGC 32778 ||| ||||| || ||||| |||||||| Sbjct 5096 ACCCGCACATGACGAACACGCACCTGC 5122 >seq3507 Length=58984 Score = 96.9 bits (106), Expect = 5e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 32657 GGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCATCCAAGAACGA 32715 || || | |||||| || |||| | |||| |||| | | ||| | ||||| | ||| || Sbjct 8507 GGGTAAGAAACACATGTCAGCAAATAACCATTCT-CGAGTTGGTTGTCATCGAGGAAGGA 8565 Query 32716 CTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACC 32775 || || || ||||| |||||| | | ||| || ||||| | ||| || ||||| Sbjct 8566 TCCGTCTGACTGATCAACTGTTCCAGATTCGAGCTTTCCAGCACAGGTTGAGCAAGCACC 8625 Query 32776 TGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 ||| | ||| ||||| | ||||| |||| ||||||| ||||||||||||||||| Sbjct 8626 TGCCCTACATGAGTATGGCAGATCAATCCCAGCTTCCTCGGCTGCATCAAGGATGTA 8682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664518286088800