Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8005 127 2e-24 >seq8005 Length=94463 Score = 127 bits (140), Expect = 2e-24 Identities = 223/321 (69%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || || ||| | || ||||| Sbjct 12157 CCAGGAACTGGAAAGACTCTGCTAGCTAAGGCTATTGCTGGAGAAGCCGGCGTTCCATTT 12216 Query 175375 ATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 || || | |||| || | ||||| || |||||||||||||| || || || | Sbjct 12217 TTCTCCATT--TCTGGTTCAGAATTTGTTGAAATGTTTGTTGGTGTCGGAGCATCTAGAG 12274 Query 175433 TTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | || || || || | | || |||||| || ||||||||||| ||||||| | Sbjct 12275 TGCGTGACCTTTTCAAGAAGGCAAAGGAAAATGCTCCTTGTATTGTCTTTGTTGATGAAA 12334 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| ||||| | |||| | | |||| | | | | || |||||| || ||||| Sbjct 12335 TTGATGCAGTGGGGAGGCAAAGAGGTACTGGAATTGGAGG--AGGAAATGATGAAAGAGA 12392 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 ||| ||| | ||||| || || || ||||||||||||||||| | || || ||| | Sbjct 12393 ACAGACACTGAATCAGCTTCTGACTGAGATGGATGGCTTTGAGGGAAACACCGGTATTAT 12452 Query 175611 GGTTATTGCGGCCACTAATCG 175631 ||| |||| || |||||||| Sbjct 12453 TGTTGTTGCTGCAACTAATCG 12473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595694581539200