Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7113 192 9e-44 seq16595 96.9 5e-15 seq14764 91.5 2e-13 >seq7113 Length=4078 Score = 192 bits (212), Expect = 9e-44 Identities = 562/855 (66%), Gaps = 28/855 (3%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| || || || ||| | ||||| ||||||||||| || |||| ||||| || Sbjct 910 AGCTTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAAT 851 Query 17920 TAAATTCATAA-AATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGT 17978 || | ||| ||||||| ||||| | |||| ||| || | | | | Sbjct 850 CAATTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCAC 791 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 || |||||||| || |||||||| | ||||| ||| ||||| || |||||||||| Sbjct 790 CCAACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTA 731 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 || || || || |||||| | ||||| | || || ||||| | ||||| | Sbjct 730 CTAAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCA 671 Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAAC 18158 || | | | || || || || | || || | | | || | ||||| Sbjct 670 CGATCCCT-TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGA-AGGGTG-TAGAGTAAAC 614 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | || ||||| || | |||||||||| || ||||||||||| || ||||| | Sbjct 613 AAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATC 554 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 ||||||||| || | |||||| ||||| || ||||| |||||| | || ||||| | Sbjct 553 CGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTTCCGGAGAAGAAAA 494 Query 18279 TACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA 18338 | || ||||| || ||||| || |||||||||||| | | | | || | | Sbjct 493 TCCCTTCAACACAAGCGAAAGCAATTAATCTTTCA--NATTCGGCA-CCATCG------A 443 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||| || ||||| || ||| | ||| || || | || || || | Sbjct 442 TCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGC----A 387 Query 18399 ACAAATCATCTTTTTCTTTG----GAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||| ||| | || |||| || |||||||| || || || | | | ||||||| Sbjct 386 CGGAATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATAC 327 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| ||||| ||| |||| || || || || || | ||||||| | || || | Sbjct 326 ATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAG 267 Query 18515 TATTGAATCTCGCT-ATAAAATCTTTCTACCAA-ATTCTCATTAACTATACCGTCAGCAG 18572 ||||||||| | || ||| | || ||| ||| ||| ||| ||||| |||| || Sbjct 266 ACTTGAATCTCTTTCATGAAACGAT--TAGCAAGATTTTCAAGAACAATACCATCAGAAG 209 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCAT--TATCCTTGAGAT-TGT 18629 || || || || | ||| | |||||||||||| ||||| | | |||| | | Sbjct 208 CAGCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCT 149 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 ||| | || ||||| ||| |||||||||||||| | ||||| || || | ||| | Sbjct 148 CCCAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAG 89 Query 18690 CCTGTTTGTACATTT 18704 | | |||||||||| Sbjct 88 CTTTCTTGTACATTT 74 >seq16595 Length=7721 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || ||||||||||| || || ||||| || || || || || Sbjct 1729 AATGCAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTC 1788 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || | || || || ||||| || || || || ||||| || Sbjct 1789 AGATACCATTGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGGATTCCCCCAGACCA 1848 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| ||| ||||||||||| || ||| | || || | ||||||| Sbjct 1849 GCAGCGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTATA- 1907 Query 156002 TATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||| ||| | || ||||| Sbjct 1908 -ACATCCAAAAGGAGTCTACTCTTCA 1932 >seq14764 Length=84029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | || ||||| || || || || || || || || Sbjct 1948 ATGCAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCG 1889 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| | ||||| ||||| || ||||| || || || || || Sbjct 1888 GACACCATTGACAACGTGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACCAG 1829 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| |||||| | ||||| | ||||| ||| Sbjct 1828 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAAT 1769 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 1768 ATCCAGAAGGAGTCCACCCTTCA 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730798526744000