Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq16595 116 7e-21 seq5726 105 1e-17 seq14764 87.8 4e-12 >seq16595 Length=7721 Score = 116 bits (128), Expect = 7e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | ||||| | || | || | ||||| ||| || ||| |||||||| Sbjct 1960 AAAACCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATC 1901 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || ||| |||| || | || ||||||||||| || || | ||| || || || Sbjct 1900 AGCCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGG 1841 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || ||||| || || || | || |||||| || | |||||| || Sbjct 1840 GGGAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTC 1781 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| || ||||| ||||| || | ||||||||||||| Sbjct 1780 CACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 >seq5726 Length=29179 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | || | || ||||| | ||| | || || ||| || ||||||| Sbjct 26684 ACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGC 26743 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | |||||| || || || || | | ||||| || ||||| Sbjct 26744 GAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGG 26803 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || | || ||||| || | || || ||||| || Sbjct 26804 AATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| || |||| ||||| | || ||||||||||| Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq14764 Length=84029 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | ||| | || | || | ||| | |||||| || || || || | Sbjct 2753 ACCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGC 2812 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| || || || ||||| || | || ||||| ||||| Sbjct 2813 AAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGG 2872 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| ||||| || || |||| || || ||| | ||||| || || Sbjct 2873 AATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGAC 2932 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| || || ||||| || | ||||| | || || ||||| Sbjct 2933 TTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982999914309000