Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7113 145 1e-29 seq5726 114 2e-20 seq16595 104 4e-17 seq14764 86.0 1e-11 >seq7113 Length=4078 Score = 145 bits (160), Expect = 1e-29 Identities = 358/535 (67%), Gaps = 19/535 (4%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || || |||| | || || || || |||||||| |||| |||||| || || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 38891 ATTCATAA-AATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATA 38949 | ||| ||||||| |||||| | |||| ||| || | | | | || | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | |||||||| || |||||||||| ||||| |||||| ||||| |||||||| | || Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | | ||| | ||||||| | ||||| |||| ||||| || || | ||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACGA 668 Query 39070 tcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAACA 39127 || || || | || | ||| ||| | || | | | | || |||||||| Sbjct 667 TCCCTTGAATCTTCTCTTGGG-TAAGCTTTTTCTTCAGAAGGGTG----TAGAGTAAACA 613 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 || ||||| ||| | ||||| || | || || ||||| || || |||||||| Sbjct 612 AGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCC 553 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAATA 39246 |||||||| || | ||||||||||| || || || ||| ||||| | || ||||| | Sbjct 552 GGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGA-GCAGAAACTTCCGGAGAAGAAAA 494 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 | || || ||||| || || || |||| |||| | | ||| | |||| | Sbjct 493 TCCCTTCAACACAAGCGAAAGCAATTAATCTTTC-----ANATT-CGGCACCATC---GA 443 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 |||| ||| |||||| || ||||| || || | | |||| || |||| || || Sbjct 442 TCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGC 388 >seq5726 Length=29179 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | ||| | || ||||| | ||| | || || || || ||||| | Sbjct 26684 ACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGC 26743 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || || | |||||| || || ||||| | | |||||||| ||||| Sbjct 26744 GAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGG 26803 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || | || ||||| || || || || ||||| || Sbjct 26804 AATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || |||||||| || |||| ||||| | ||| ||||||||||| Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 104 bits (114), Expect = 4e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171839 aaTACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | || | ||||| ||| || || |||||||| Sbjct 1960 AAAACCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATC 1901 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | ||| | || || | || |||||||||||||| || | ||| ||||| || Sbjct 1900 AGCCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGG 1841 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || ||||| || || || | || |||||| || |||||||| || Sbjct 1840 GGGAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTC 1781 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||| || ||||| ||||| || | |||||||||||| Sbjct 1780 CACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 >seq14764 Length=84029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | |||| || | || |||| || |||||||||||||| || ||| Sbjct 1767 ATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTC 1826 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || || ||||| || ||||| ||||| | || || || || || Sbjct 1827 TGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTG 1886 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || | || || || || || || | || || | |||||||||| Sbjct 1887 TCCGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGC 1946 Query 172068 AT 172069 || Sbjct 1947 AT 1948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903808391772000