Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7113 134 4e-26 seq94034 123 7e-23 seq26730 114 4e-20 seq8005 109 2e-18 seq18245 91.5 4e-13 seq2012 89.7 2e-12 seq3459 86.0 2e-11 >seq7113 Length=4078 Score = 134 bits (148), Expect = 4e-26 Identities = 477/737 (65%), Gaps = 28/737 (4%) Strand=Plus/Plus Query 133106 ATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTA 133165 || ||| | ||||| || ||| ||| | || ||||| || ||||| ||| | Sbjct 67 ATCTGGGAAATGTACAAGAAAGCTGAAGCGTCCTTCTGGACGGCAGAAGAAGTTGATCTT 126 Query 133166 TCCAAAGACCCAGCCCACTGGGAAGCC-CTT--ACTGGGGATGAAAAACATTTTATTTCT 133222 || |||| | | ||| ||||| | ||| ||| |||||| ||||||| ||| | Sbjct 127 TCACAAGATCTACGCCATTGGGAGACATCTTTAACTTCCGATGAACAACATTTCATTACC 186 Query 133223 ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGG 133282 || | || || |||||||| |||||||||||||||||||||| | | | || Sbjct 187 CACGTTCTTGCTTTCTTTGCTGCTTCTGATGGTATTGTTCTTGAAAATCTTGCTAATCGT 246 Query 133283 TTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATG 133342 || ||| ||| ||||| | | ||||||||||| ||||| || | || || || || Sbjct 247 TTCATGAAAGAGATTCAAGTCTCTGAAGCCCGTGCGTTTTACGGCTTCCAAATCGCCATT 306 Query 133343 GAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCG-T 133401 ||||| |||||||| | |||||| || | || || ||||| ||||| | | | Sbjct 307 GAAAACATCCATTCCGAAATGTATTCTCTCCTCTTAGAAACCTACATAAAAGACTCTGTT 366 Query 133402 CCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGA 133461 | | || ||| | ||||| || ||| | | |||||| | || |||||| | || Sbjct 367 CAAAAAACAC-GATTATTCCGTGCAATTGAAACAATCCCTTGTGTAAAGAAGAAAGCCGA 425 Query 133462 CTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTT 133521 |||||| | | ||||||| | | |||| | || | | | ||||||| Sbjct 426 CTGGGCCTTAAGATGGATCGATG------GTGCCGAATNTGAAA---GATTAATTGCTTT 476 Query 133522 TGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAA 133581 ||| || || || ||||| ||| || |||||||| ||||| ||||||||||| Sbjct 477 CGCTTGTGTTGAAGGGATTTTCTTCTCCGGAAGTTTCTGCTCGATTTTCTGGCTTAAAAA 536 Query 133582 GCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACT 133641 || || | | || ||| | || || |||||| | || ||| | || || | || Sbjct 537 ACGCGGGTTAATGCCCGGATTAACATTCTCAAACGAATTAATCTCACGAGATGAAGGGCT 596 Query 133642 TCACACCGAATTTGCCGTTTTA--CTTCACTCTAAATTAGAGCGACC--ACTCAAAAAGA 133697 ||| ||| || || |||| || ||| || ||| | | || ||| Sbjct 597 TCATTGCGATTTCGCTTGTTTACTCTACACCCTTCTGAAGAAAAAGCTTACCCAA----G 652 Query 133698 ATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTG 133757 | |||||| ||| || | | ||| || |||||||| || ||||| || | || Sbjct 653 AGAAGATTCAAGGGATCGTGAAAGATGCAGTTGAAATCGAAAGGGAATTCGTCTGTGATG 712 Query 133758 CTCTGCCGTGCCGTTTAATTGGTATGAA---TGATGTGCTGATGCAGCGTTATATTGAAT 133814 | ||||| | |||| | |||||||| |||| | ||| || || ||||||| Sbjct 713 CACTGCCAGTCGCTTTAGTAGGTATGAACTGTGATTTAATGAGTCA---ATACATTGAAT 769 Query 133815 TTGTAGCTGACAGATTG 133831 |||| ||||| |||||| Sbjct 770 TTGTTGCTGATAGATTG 786 >seq94034 Length=385 Score = 123 bits (136), Expect = 7e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| ||||||| ||| | || | | ||||| |||||||| || ||||| ||||| Sbjct 41 GCTTCTCCTGCTATTGCTTTAGCTAATAAAGTCTTCCCTGTTCCTGGAGGTCCTACTAAT 100 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||||||||||| || | ||| || || ||| | | || || ||| | ||||| || Sbjct 101 AGAACTCCCTTGGGAATTTTGGCTCCTATAGATGCAAACTTTTCTGGGGTTTTTAAGAAC 160 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCA 289344 ||||||||||| |||| || | ||||||||||||| ||||||||||||| Sbjct 161 TCTACAATTTCTTCAAAGTCTTGTTTTGCCTCATCAACTCCTGCTACATCA 211 >seq26730 Length=2027 Score = 114 bits (126), Expect = 4e-20 Identities = 225/329 (68%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| ||||||||||| || ||||| || | | || || | || | || | Sbjct 27 TACCCACAGCATCAATCTCATCAATAAACACAATGCATGGTGCCTTACTCTTAGCCTTCT 86 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| || ||||| || | || ||||||| |||||| ||| |||||||| ||||| | Sbjct 87 CAAACAAATCTCTCACTCTAGAAGCTCCAACCCCAACAAACAACTCTACAAACTCAGACG 146 Query 289148 -CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || | || || ||| | || ||| || || ||||| |||||||| | || ||| Sbjct 147 CCGCACAC-GAAAAGAACGGCACTCCTGCCTCCCCGGCTACCGCCCTCGCTAACAGCGTC 205 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCA 289263 || ||||| ||||| || ||| | | ||| || ||||| | ||||||||| ||| Sbjct 206 TTCCCTGTCCCAGGGGGACCCACAAGAAGACACCCTTTTGGAATTTTTGCCCCTAATGCA 265 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | | || || |||||| |||| ||||| || || | ||||| | ||| | || || Sbjct 266 G---TGTACTTATCAGGGTTCTTCAAAAAATCCACTACTTCCTGTAATTCTAACTTAGCT 322 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| || || ||||||| ||| || Sbjct 323 TGATCAGCACCAGCAACATCAGAAAATGT 351 >seq8005 Length=94463 Score = 109 bits (120), Expect = 2e-18 Identities = 305/463 (66%), Gaps = 9/463 (2%) Strand=Plus/Minus Query 288892 TCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATA 288951 || |||| || ||||| || | |||| |||| | || || ||| |||||||| Sbjct 12479 TCTGCTCGATTAGTTGCAGCAACAACAATAATACCGGTGTTTCCCTCAAAGCCATCCATC 12420 Query 288952 CTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCC 289011 || | || ||||| ||||| ||||| |||||||||||| |||| | | || Sbjct 12419 TCAGTCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTT---CCTCCTCCAATTCCA 12363 Query 289012 GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA 289071 | | | |||| | || || ||||||||||| |||| || | | ||| |||| | Sbjct 12362 GTA---CCTCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAATACAAGGAGCA 12306 Query 289072 TTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATT 289131 |||| | || | || | || | || | |||||||| | ||||||| ||||| Sbjct 12305 TTTTCCTTTGCCTTCTTGAAAAGGTCACGCACTCTAGATGCTCCGACACCAACAAACATT 12246 Query 289132 TCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGC 289190 || |||||||| ||| | || | | || | |||| || ||||| || || | || Sbjct 12245 TCAACAAATTCTGAACCAGA-AATGGAGAAAAATGGAACGCCGGCTTCTCCAGCAATAGC 12187 Query 289191 CCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTAC 289250 | | || || || ||||| || ||||| ||||| || ||| |||||||| || || | Sbjct 12186 CTTAGCTAGCAGAGTCTTTCCAGTTCCTGGTGGGCCAACTAGCAGAACTCCTTTAGGGAT 12127 Query 289251 TTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAG 289310 || || ||| | | ||||||| ||||||| |||||||| | ||| | Sbjct 12126 ACGAGCTCCTACAGCAGTGAACCTCTCAGGTTTCTTTAAGAATTCTACCACCTCCATGAA 12067 Query 289311 TTCATATTTTGC-CTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||||| |||||| || || |||||| |||| || Sbjct 12066 ATCCTGCTTTGCTNTCATCAACACCAGCAACATCATCAAACGT 12024 >seq18245 Length=53001 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 60188 CGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTT 60247 || || ||||| ||||| || |||| || | ||| ||||| || | || | |||||| Sbjct 28681 CGTGTGCCAAACTGTCCTTTAGGCTTCAAAAAATTGATGTTATTTGCACCCAGAAAATTT 28622 Query 60248 TGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGT 60307 || || | |||||||| | || | || ||||||||||| ||||| || |||| | Sbjct 28621 TGTGCCATGCCAACAATTGTACTTTGTATGCTGGCTTCACCATGATGGTAAGCAGATTTC 28562 Query 60308 TCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 || || || || |||||||| || || ||||| ||||| Sbjct 28561 TCGGAGACGTAACCACTGAACTGAGCAACTTTGATTTC 28524 >seq2012 Length=44058 Score = 89.7 bits (98), Expect = 2e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || || |||||| | ||| | |||| | || |||| | | Sbjct 948 ACATACATGAACCCTATATGCATCACTTTGGTCGAACAGCCTCTCTTTAAGGAAGTGGGC 1007 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | ||||||||| || | |||||| || || ||||| ||||||||||| || Sbjct 1008 AGCACCATGGGCAATCATACAGTCTCTCTCCATCTCTCCAAAACGTAGACCACCATCACG 1067 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | |||||| |||||||| | || | | | | |||||| | || || Sbjct 1068 AGATCGACCCTCAGCAGGCTGCCTGGTCAAAATTTGTACAGGACCTCTTCCACGAGAGTG 1127 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||||||| ||||||||||| || || |||||| Sbjct 1128 GATCTTATCATCAACCATATGCTTAAGTCGTTGGTAG 1164 >seq3459 Length=60857 Score = 86.0 bits (94), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||||||||||| ||| |||||||| || | |||| ||| || || |||| | Sbjct 6518 CCAACAGCATCAAGTTCATCAATGAATATAATTGACGGTGAAGATTTCCTTGCAACGCTA 6577 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| | ||| | ||||| || ||| ||| |||||||||||| ||| Sbjct 6578 AAAAGATCTCTAATACGTGCAGCTCCCCTCCCGACAAACAACTCTACAAATTCACTGGCG 6637 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| | ||||| |||| ||||| || || || || | || || | || || Sbjct 6638 GATACAGAGAAGAATGGTACACCAGCTTCACCAGCCACAGCACGAGCTAGTAAGGTTTTT 6697 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA 289249 |||||||| || || || | || ||||| || | |||| Sbjct 6698 CCTGTTCCTGGAGGACCTACCAACAGAACACCTCTAGGTA 6737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469604841823580