Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5726 134 1e-26 seq14764 125 6e-24 seq5800 114 1e-20 seq16595 109 5e-19 seq14392 91.5 1e-13 seq7108 82.4 7e-11 >seq5726 Length=29179 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| || ||||| || || || || || ||| || | Sbjct 26911 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCCTCT 26852 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || || ||| Sbjct 26851 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 26792 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || || ||| | | | | ||||| ||| Sbjct 26791 CAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTACAAC 26732 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || || |||||| | |||||| | || || Sbjct 26731 ATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq14764 Length=84029 Score = 125 bits (138), Expect = 6e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | ||||| || |||||||| || || || |||||||| || | Sbjct 2981 GATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTC 2922 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| |||| |||| ||||| || ||||||||||||||||||||| || || |||| Sbjct 2921 AGACACCATAGACAACGTCAAAACCAA-GATCCAAGACAAAGAAGGAATTCCACCAGATC 2863 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | |||||||||||||| || || || || || || ||| | | | | || || | Sbjct 2862 AGCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACA 2803 Query 24882 ACATTCAAAAGGAATCGACACTACAC 24907 |||||||||| || || || || ||| Sbjct 2802 ACATTCAAAAAGAGTCAACTCTCCAC 2777 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || |||||||| | || || || | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||||||||| ||| || ||||| || ||||| || || ||||| Sbjct 2116 GACACCATTGATAATGTTAAAACAAA-GATTCAGGACAAGGAGGGAATTCCCCCAGATCA 2058 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| || |||||||| || ||| | | | | ||||| || Sbjct 2057 GCAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAA 1998 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || ||||| || ||||| | || |||| || || Sbjct 1997 CATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGG 1950 >seq5800 Length=18681 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| ||||| || || ||||| || || || Sbjct 1734 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGTTCC 1793 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| || || |||||||||||| ||||| || || || || || Sbjct 1794 GATACCATTGACAACGTTAAGACTAA-GATCCAAGACAAGGAAGGGATTCCCCCAGACCA 1852 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||||||||||| || ||||||||||| |||||| | | | | | || || || Sbjct 1853 ACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTACAA 1912 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| ||||| ||| Sbjct 1913 TATCCAGAAAGAATCAACACTCCAC 1937 >seq16595 Length=7721 Score = 109 bits (120), Expect = 5e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | ||||| || || || ||||| ||||| ||||| || || | Sbjct 452 GATGCAAATCTTCGTGAAAACCCTTACTGGCAAAACCATTACTCTCGAGGTCGAGAGTTC 511 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| ||||| || |||||||||||| |||||||| || || |||| Sbjct 512 TGACACCATTGACAACGTCAAAACCAA-GATCCAAGACAAGGAAGGAATTCCCCCAGATC 570 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 | |||||||||||||| || || ||||| || || || Sbjct 571 AGCAACGTTTGATCTTCGCTGGAAAACAACTTGAAGA 607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || ||||| | || || || | | Sbjct 1730 ATGCAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTCA 1789 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| || || ||| || || || || || || || || || || Sbjct 1790 GATACCATTGATAATGTTAAGACCAA-GATTCAGGATAAGGAGGGGATTCCCCCAGACCA 1848 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||| ||||| || || ||||| |||||| | | | || | |||||||| Sbjct 1849 GCAGCGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTATAA 1908 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| |||||||| || || || ||| Sbjct 1909 CATCCAAAAGGAGTCTACTCTTCAC 1933 >seq14392 Length=19752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 138138 CTTTAGCAGTGAAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCT 138197 ||| |||| |||| |||| ||||||||||| || |||||||| |||| | ||||| Sbjct 18680 CTTGAGCATGGAAG---TATCGACAGTAAACTTGATAGCATCAGCAGCTGCTCGTGTTCT 18624 Query 138198 CAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAG 138257 | ||||||||| || || || || || || | |||||| || | || | |||||||| Sbjct 18623 TAAATAATACATGCCTGTCTTCAAACCCTTATTCCAGGCATAGAAATGCAGAGAAGTGAG 18564 Query 138258 TAACGCGTAAGTCGGTT-TCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAG 138316 | || || | |||| ||| | || || | ||| || ||||| || ||| Sbjct 18563 TTTTCCGAAATTGGGTTGATNCCATATGAATATTCAGGCTTTGGCTTTGATCTATAAAAC 18504 Query 138317 CGCCTCGATCAATGGCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGT 138376 || |||||| ||||| | || ||| ||| | ||| |||||||| || ||| ||| Sbjct 18503 ATCCGCGATCAGCAGCCATATCAACTAAGTTTCTCTGTTTTATCTCCCAGACAGTCCTGT 18444 >seq7108 Length=60128 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| ||||| ||||| || || || || ||| || Sbjct 5207 GATGCAGATCTTCGTGAAAACCCTAACTGGTAAGACTATCACCCTTGAGGTTGAAAGCAG 5148 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 ||||||| | || | || ||| |||||||||||||| ||||| Sbjct 5147 CGACACAATCGACAATGTCAAAACTAAGATCCAAGACAAGGAAGG 5103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449237712695200