Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5800 82.4 6e-11 >seq5800 Length=18681 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 110262 AGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA 110321 ||| || |||||||||||| || ||||| ||| | ||||||||||| || || |||| Sbjct 1723 AGATATATAAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGG 1782 Query 110322 CGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGC 110381 ||| | |||||| | | | | || || ||||| ||||| ||||| | | Sbjct 1783 TCGAGAGTTCCGATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTC 1842 Query 110382 CCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGG 110441 || || ||||| | | || | || || |||||||| ||||||| | | || | | Sbjct 1843 CCCCAGACCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTG 1902 Query 110442 CGGATTACAACATTCAAAAAGAATCTAC 110469 | || ||||| || || |||||||| || Sbjct 1903 CCGACTACAATATCCAGAAAGAATCAAC 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412251202968620