Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5726 95.1 8e-15 seq14764 89.7 3e-13 >seq5726 Length=29179 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| |||| || |||||||| ||||| || || | Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || ||||| ||||||||||| || || ||||| |||||| | || Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || || ||||| || | ||||| ||| || || Sbjct 26805 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGAC--AT--TGTCGATGGTGTCAGAGGATTC 26860 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||||||||| || || || ||||| || || ||||||||||| Sbjct 26861 AACCTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 26911 >seq14764 Length=84029 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| ||||| | || | || |||| || ||||||||||| ||||| Sbjct 2789 CTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAA 2848 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| |||||||| ||| | || | || || ||||| | || || ||||||| Sbjct 2849 GATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTT 2908 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| | || |||||| || | || || ||||| || || ||||| || || Sbjct 2909 GTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCAC 2968 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 2969 GAAGATTTGCAT 2980 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| ||||||||| ||||| || || | || | || |||| Sbjct 1965 AGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCT 2024 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||| || ||||||| | ||||| ||| | || | ||||||||||| Sbjct 2025 TCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 2084 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| ||| || || |||| || || ||| || || | ||| || Sbjct 2085 TGAATCTTTGTTTTAAC--AT--TATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAAT 2140 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| ||||| || ||||| ||||| Sbjct 2141 AGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325227032833460