Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3507 122 1e-22 >seq3507 Length=58984 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||| || || ||||| || |||||||| || ||||| ||| | || ||| Sbjct 8682 TACATCCTTGATGCAGCCGAGGAAGCTGGGATTGATCTGCCATACTCATGTAGGGCAGGT 8623 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || ||||||||||| || | | ||||| || |||||||| ||| || Sbjct 8622 GCTTGCTCAACCTGTGCTGGAAAGCTCGAATCTGGAACAGTTGATCAGTCAGACGGATCC 8563 Query 138658 TTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTAGCATACCCCAC 138716 ||||| ||||| ||||| | | || | || | | | |||| || || | ||||| Sbjct 8562 TTCCTCGATGACAACCAACTCG-AGAATGGTTATTTGCTGACATGTGTTTCTTACCCGCG 8504 Query 138717 ATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 |||||||||| ||||| | || | ||||||| || || |||| Sbjct 8503 ATCCGATTGTGTAATTCACACCCACAAAGAGGGTGATCTTTACT 8460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604778837634400