Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq14764 98.7 1e-15 >seq14764 Length=84029 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | ||| | || | || || |||||||| |||||||| ||| Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| ||||| || || || |||||| |||||||||||| || || Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || ||| | | || | ||||||| || ||| Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| ||||| | ||||| ||||| |||||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487827428088000