Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5726 152 1e-31 seq16595 134 3e-26 seq14764 127 4e-24 seq5800 127 4e-24 >seq5726 Length=29179 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| || || || || || ||||| ||||| ||||| || || ||||||| Sbjct 26684 ACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGC 26743 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||| ||||||||||| || || || || | |||||| ||||| || Sbjct 26744 GAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGG 26803 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| ||||| | || ||||| || || || ||| | ||| || Sbjct 26804 AATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || ||||| | || || || || ||||||||| Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 26912 >seq16595 Length=7721 Score = 134 bits (148), Expect = 3e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| |||||||| || || || || |||||||||| | | | || Sbjct 1945 ACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCC 1886 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || |||||||| || | | || || ||||| || || || ||||| Sbjct 1885 ATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTT 1826 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||| |||||||| | || ||||| ||||| ||||| | || | || || ||||| || | Sbjct 1825 ATCCTGAATCTTGGTCTTAACATTATCAATGGTATC-TGAGCTCTCCACCTCCAAGGTAA 1767 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || ||||| ||||| ||||||||||||||| Sbjct 1766 TGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| |||||||||||||| ||||| | | ||| |||||||| || ||||||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| | ||| || || ||||| || ||| | || || || | ||| Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || | || || || || || ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq14764 Length=84029 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| ||||| ||||| | ||| ||||| || ||||| || || || || || | Sbjct 2753 ACCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGC 2812 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||||||||| ||||| || ||||| | | ||| |||||||| || Sbjct 2813 AAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGG 2872 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || ||||| ||||| | ||| || || || || || || | || || Sbjct 2873 AATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGAC 2932 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||| || ||||| || || | || || || || || ||||| Sbjct 2933 TTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| ||||| ||||||| | | | | ||| Sbjct 1733 ACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACC 1792 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || |||||||| || | || || || || || || || |||||||| Sbjct 1793 ATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTT 1852 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||||| || || | || || || ||||| || || || | || || ||||| || | Sbjct 1853 GTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCG-AGCTCTCAACCTCCAAGGTGA 1911 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| | ||||| || ||||||||||| Sbjct 1912 TCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 >seq5800 Length=18681 Score = 127 bits (140), Expect = 4e-24 Identities = 170/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || || | ||| || || ||||||||||| ||||| || || | Sbjct 1960 CCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCA 1901 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || ||||| ||||| ||||| ||||| | | ||||| ||||| || Sbjct 1900 AGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGA 1841 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| | || || || ||||| ||||| | || || Sbjct 1840 ATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACC 1781 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 || | |||||| || ||||| || | ||||| || || || |||||| |||||| Sbjct 1780 TCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATT-TTATAT 1727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980351102578260