Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14764 113 4e-20 seq5800 98.7 1e-15 seq5726 91.5 1e-13 >seq14764 Length=84029 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| ||||||||||| ||| || ||| | || || |||||||| | Sbjct 1751 GGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCA-TCTTCCAGCTGCTTAC 1809 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | || ||||||||| || ||||| ||||||||||| ||| || || Sbjct 1810 CAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTCGTCT 1869 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||||| || || || || |||| Sbjct 1870 TCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTTTCCTGTGAGAG 1929 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1930 TCTTGACGAATATCTGCAT 1948 >seq5800 Length=18681 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| |||||||| ||| | | ||| | | | ||||| ||||| || || Sbjct 1930 GTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCA-TCCTCTAGCTGTTTCCC 1872 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||| ||||| || || || ||||||||||| |||||| ||| Sbjct 1871 AGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTT 1812 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || |||| ||| || |||| || | ||||||||||| ||||| Sbjct 1811 AACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGT 1752 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 1751 CTTGACGAAGATTTGCAT 1734 >seq5726 Length=29179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || |||||||| | | || | | | || || || Sbjct 26706 AAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCA-TCTTCAAG 26764 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| ||||||| || || ||||| || || || ||||||||||| ||| Sbjct 26765 TTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGAT 26824 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | || || || || | ||| | |||||| || Sbjct 26825 CTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCC 26884 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 26885 TGTTAGGGTTTTCACGAAGATCTGCAT 26911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482711742541600