Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7113 143 6e-29 >seq7113 Length=4078 Score = 143 bits (158), Expect = 6e-29 Identities = 354/532 (67%), Gaps = 18/532 (3%) Strand=Plus/Plus Query 131462 GATATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAA 131521 || ||||| |||||| ||| ||| |||||||||| | ||||| | ||| | | || Sbjct 73 GAAATGTACAAGAAAGCTGAAGCGTCCTTCTGGACGGCAGAAGAAGTTGATCTTTCACAA 132 Query 131522 GATATTGATGATTGGGAAAAAT---TAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTT 131578 ||| | ||||||| | || |||| | ||||| || |||| || || | ||| Sbjct 133 GATCTACGCCATTGGGAGACATCTTTAACTTCCGATGAACAACATTTCATTACCCACGTT 192 Query 131579 CTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATT 131638 ||||| ||||| || | |||||| |||||| |||||||||||| || | |||||| Sbjct 193 CTTGCTTTCTTTGCTGCTTCTGATGGTATTGTTCTTGAAAATCTTGCTAATCGTTTCATG 252 Query 131639 CAAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCT 131698 |||| ||| | | |||||| |||| ||| || ||| ||| ||||| Sbjct 253 AAAGAGATTCAAGTCTCTGAAGCCCGTGCGTTTTACGGCTTCCAAATCGCCATTGAAAAC 312 Query 131699 ATTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAA 131758 || ||| ||| |||||||| | | | || | || ||||| || || | || Sbjct 313 ATCCATTCCGAAATGTATTCTCTCCTCTTAGA-AACCTACATAAAA--GACTCTGTTCAA 369 Query 131759 AATA---AATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGG 131815 || | |||||| ||| | | | | | ||| | || |||||||| || ||| Sbjct 370 AAAACACGATTATTCCGTGCAATTGAAACAATCCCTTGTGTAAAGAAGAAAGCCGACTGG 429 Query 131816 GCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCT 131875 || | | |||||| |||| | ||| || | | |||| | | ||||| ||| Sbjct 430 GCCTTAAGATGGAT---CGATGGTGCCG--AA----TNTGAAAGATTAATTGCTTTCGCT 480 Query 131876 TGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGT 131935 ||||||||||| || ||||| || || |||||| | || || |||||||| || || Sbjct 481 TGTGTTGAAGGGATTTTCTTCTCCGGAAGTTTCTGCTCGATTTTCTGGCTTAAAAAACGC 540 Query 131936 GGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAG 131987 || || ||||| ||| | |||| || || |||| ||||| ||||||||| Sbjct 541 GGGTTAATGCCCGGATTAACATTCTCAAACGAATTAATCTCACGAGATGAAG 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185028523383740