Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5726 129 4e-25 seq14764 105 4e-18 >seq5726 Length=29179 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| || | ||||||||| ||||| || || || ||||||||||| | Sbjct 26683 CACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAG 26742 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || | || || | |||||||||||| ||||| | ||| || || ||| | | Sbjct 26743 CGAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTG 26802 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| ||| | |||||| ||||| Sbjct 26803 GAATTCCTTCCTTGTCTTGGATCTT-GGTCTTGACATTGTCGATGGTGTCAGAGGATTCA 26861 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| ||||||| ||||| || ||||||||||| Sbjct 26862 ACCTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 26911 >seq14764 Length=84029 Score = 105 bits (116), Expect = 4e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || | || ||||| ||||||||| |||||||| |||| Sbjct 2753 ACCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGC 2812 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||| ||||| || || |||||||| ||||||||| | || Sbjct 2813 AAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGG 2872 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | ||||||||||| || || |||| || | ||| | |||||| ||| | Sbjct 2873 AATTCCTTCTTTGTCTTGGATCTT-GGTTTTGACGTTGTCTATGGTGTC---TGAACTCT 2928 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || ||||| || | ||||| || ||||| ||||| Sbjct 2929 CGACTTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||||||| || ||| ||| || || ||||||||||| | Sbjct 1949 ACCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGC 2008 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||||| ||||| ||||| | |||||||||| | || Sbjct 2009 AAGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2068 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | || || ||||| ||| || ||||| ||||| || | |||||| ||| | Sbjct 2069 AATTCCCTCCTTGTCCTGAATCTT-TGTTTTAACATTATCAATGGTGTC---TGAACTCT 2124 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || || || || | || || || ||||| |||||| Sbjct 2125 CAACCTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCATA 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328233926572800