Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14764 129 1e-24 seq5726 109 1e-18 seq16595 102 2e-16 seq5800 100 7e-16 >seq14764 Length=84029 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || ||||||||||| |||||||| ||||| || || || || ||| Sbjct 1945 CAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCGGAC 1886 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| || || ||| || Sbjct 1885 ACCATTGACAACGTGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACCAGCAG 1826 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || |||||| |||||||||| | |||||||| |||||||| || Sbjct 1825 AGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAATATC 1766 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 1765 CAGAAGGAGTCCACCCTTCACCTTGT 1740 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | ||||| || ||||| ||||| | || Sbjct 2965 AAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCAGACACCATAGACAAC 2906 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || ||||| ||||| |||||||||||| || || ||| | | |||||| Sbjct 2905 GTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAGCAACGTTTGATCTTC 2846 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | |||||||| | ||| | ||||| |||||| | || |||||||| Sbjct 2845 GCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAACATTCAAAAAGAGTCA 2786 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||||||| Sbjct 2785 ACTCTCCACCTTGTT 2771 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| ||| || ||||||||||| | ||||||||| Sbjct 1740 ACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCC 1799 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 |||||||| || || || || Sbjct 1800 AGCTGCTTACCAGCAAAAAT 1819 >seq5726 Length=29179 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| ||||| || || | || || ||| |||||||| |||| Sbjct 26896 AAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCCTCTGACACCATCGACAAT 26837 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||||||| || ||| ||| | || || ||| Sbjct 26836 GTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAACGTCTCATTTTC 26777 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || | |||||||| | ||| | || ||||||||| ||||||| || || Sbjct 26776 GCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTACAACATCCAGAAGGAATCG 26717 Query 206365 ACTCTTCA 206372 |||||||| Sbjct 26716 ACTCTTCA 26709 >seq16595 Length=7721 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||| || | || || || || || || ||||| ||||| || || || Sbjct 1733 CAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTCAGAT 1792 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || ||| || ||| || Sbjct 1793 ACCATTGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGGATTCCCCCAGACCAGCAG 1852 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || |||||| | || |||||| | || ||||| ||||| ||| || Sbjct 1853 CGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTATAACATC 1912 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || |||||||||||||||||||| Sbjct 1913 CAAAAGGAGTCTACTCTTCACCTTGT 1938 >seq5800 Length=18681 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| ||| || || ||||||||||| ||||| || Sbjct 3414 AAGATTCAGGATAAGGAGGGTATTCCGCCAGATCAGCAGAGACTTATCTTTGCCGGGAAA 3473 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | |||||||||||||| | || || |||||| | ||||| |||||||||||||| Sbjct 3474 CAACTTGAAGATGGAAGGACACTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCAT 3533 Query 206374 CTTGT 206378 ||||| Sbjct 3534 CTTGT 3538 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| |||||||||||||| ||||| | || |||||||| | |||||||||||||| Sbjct 3538 ACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTCCTTCCATCTTCA 3479 Query 204824 AGCTGCTTTCCGGCGAAGATAAG 204846 || || || ||||| |||||||| Sbjct 3478 AGTTGTTTCCCGGCAAAGATAAG 3456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180044028450140