Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7113 98.7 1e-14 >seq7113 Length=4078 Score = 98.7 bits (108), Expect = 1e-14 Identities = 270/406 (67%), Gaps = 11/406 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | |||| | || |||||||||||| | |||| | || || ||||| Sbjct 44 TGTTTCCGATTCAATACCCTCAAATCTGGGAAATGTACAAGAAAG-CTGAAGCGTCCTTC 102 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTCCACTGGGTG---TCGCTGA 1455867 ||||| || || || || || || || ||| ||| |||| | || | | Sbjct 103 TGGACGGCAGAAGAAGTTGATCTTTCACAAGATCTACG--CCATTGGGAGACATCTTTAA 160 Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927 ||| || | |||||||| | ||||| || || || ||| || || ||||| Sbjct 161 CTTCCGATGAACAACATTTCATTACCCACGTTCTTGCTTTCTTT-GCTGCTTCTGATGGT 219 Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987 || || || || || || || || ||||||||| | ||| | | || || ||| Sbjct 220 ATTGTTCTTGAAAATCTTGCTAATCGTTTCATGAAAGAGATTCAAGTCTCTGAAGCCCGT 279 Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 ||||||||| ||||| |||||||| ||||||||||| || |||| || || ||||| Sbjct 280 GCGTTTTACGGCTTCCAAATCGCCATTGAAAACATCCATTCCGAAATGTATTCTCTCCTC 339 Query 1456048 ATCGACACCTACGTCAAGGAC-CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 | || |||||| | || ||| | | || | || || | | || || || || || || Sbjct 340 TTAGAAACCTACATAAAAGACTCTGTTCAAAAAACACGA-TTATTCCGTGCAATTGAAAC 398 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | || | || | ||| || ||||||||||| | | |||||| Sbjct 399 AATCCCTTGTGTAAAGAAGAAAGCCGACTGGGCCTTAAGATGGATC 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7166493541329080