Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16595 127 2e-24 seq14764 113 4e-20 >seq16595 Length=7721 Score = 127 bits (140), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||| ||||| |||||||| || | || || ||||||||||| ||||| Sbjct 1921 CTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAA 1862 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| | |||||| ||| ||||| ||| | | | Sbjct 1861 AATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATT 1802 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || |||| |||||||||| || || || || || ||||| || || Sbjct 1801 ATCAATGGTATCTGAGCTC---TCCACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTT 1745 Query 35722 CACAAATATCTGCATTC 35738 |||||||||||||||| Sbjct 1744 GACAAATATCTGCATTC 1728 >seq14764 Length=84029 Score = 113 bits (124), Expect = 4e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| ||||| || || | || |||||||||||||| ||||| Sbjct 1757 CTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCTTCCAGCTGCTTACCAGCAAA 1816 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | |||||||| ||| || ||||| || Sbjct 1817 AATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTGGATTTTCGTCTTCA-CGT 1875 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| |||| || ||||||| |||||||| || || || | ||| | Sbjct 1876 TGTCAATGGTGTCCGAGCTC---TCAACCTCCAAGGTGATCGTCTTTCCTGTGAGAGTCT 1932 Query 35721 TCACAAATATCTGCAT 35736 | || ||||||||||| Sbjct 1933 TGACGAATATCTGCAT 1948 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || |||||| || ||||||||||| || Sbjct 1950 CCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCA 2009 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || ||||| ||||||| |||||| || | ||| Sbjct 2010 AGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 2069 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| |||||| || | | | | | ||||| ||| || Sbjct 2070 ATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTC---TCA 2126 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || || || || || | ||| || || || || ||||| Sbjct 2127 ACCTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | |||||||||||||| ||||||||||| ||| Sbjct 2178 CCACCACGCAGACGGAGAACCAAATGAAGAGTACTCTCCTTTTGGATGTTGTAATCAGCC 2237 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || || || | || || ||||| || || || || ||||||| ||||| || Sbjct 2238 AAAGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTTTGCTGATC 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450132398487200