Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5800 140 3e-28 seq14764 134 1e-26 seq16595 105 7e-18 >seq5800 Length=18681 Score = 140 bits (154), Expect = 3e-28 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||||||| || | || ||||| || || ||||| || || || ||||||||| Sbjct 1962 TTCCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGG 1903 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| | || || |||||||| || || || ||||||||||| || || || | Sbjct 1902 CAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGG 1843 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || || || ||| | || ||||| || | Sbjct 1842 GAATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGA 1783 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 | |||||||| || ||||| ||||| | ||| || ||||| ||||||||||| | | | | Sbjct 1782 CCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTTATATATCT 1723 Query 134725 TCAAC 134729 |||| Sbjct 1722 GCAAC 1718 >seq14764 Length=84029 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || ||||| || || || || |||||||||||||||||| || Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || || || ||||| || |||||||| |||||||| || || Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || |||||| ||| | ||||| || || || Sbjct 2874 ATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACT 2933 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || |||||||| | ||||| ||||| |||||||| Sbjct 2934 TCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| || ||||| ||||| || || ||||| || ||||| | | || || || Sbjct 1740 ACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAG-TACGACCATCTTC 1798 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| || || ||||||||||| | |||||| || || || || ||||| || ||||| Sbjct 1799 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCTTG 1858 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||||| || || ||| | ||||| || || || || | || || || || Sbjct 1859 GATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTCTT 1918 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 1919 TCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 >seq16595 Length=7721 Score = 105 bits (116), Expect = 7e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| || || ||||| || || || |||||||| |||||||| || || || ||||| || Sbjct 608 GTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTT 549 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || || |||||| ||| | ||||| || || || ||||||||||| Sbjct 548 GTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTAAT 489 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| || || | ||||| ||||| |||||||| Sbjct 488 GGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | || ||||| || || || |||||||| ||||| || || ||| Sbjct 1956 CCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCC 1897 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || ||||| || || |||||||||||||||||||| || || || Sbjct 1896 AA-GGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGG 1838 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || ||||| || || || || | || || || ||||| Sbjct 1837 AATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCAC 1778 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | |||||||| || || || || || || || || || |||||| Sbjct 1777 CTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504657106896800