Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7113 262 5e-65 seq99321 111 2e-19 seq66449 91.5 2e-13 >seq7113 Length=4078 Score = 262 bits (290), Expect = 5e-65 Identities = 607/903 (67%), Gaps = 28/903 (3%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||| || || ||||| | ||||| || ||||| ||||| |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 39385 TTCCATGA-AATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 |||||| ||||||| ||||| | || ||| ||| | | |||| | | | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 ||||||||| ||||||||||| |||||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 ||||| || || || | || || ||||||| || || || ||| | | | Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACGA 668 Query 39564 TCGATGTTACTACCTCATCACTCGGTGGATGCAAT------AAATGTTTAAACATTAAGC 39617 || | | || || || || | | || | | | | | | | ||| | Sbjct 667 TCCCTTGAA-----TCTTCTCTTGG-GTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAAC 614 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | ||||| || ||||| || || ||||||| ||||||||||| || ||||| | || Sbjct 613 AAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATC 554 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAG 39736 | ||||||| || || ||||| ||||| || || | |||| ||| ||| || ||||| Sbjct 553 CGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAGAAA 495 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATC 39796 || ||||| || || || |||| | ||| || | | | || || ||| Sbjct 494 ATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCAN----ATTCGG--CACCATCGATC 441 Query 39797 CA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 || ||| | ||||| || |||||||||||||||||||| |||||||| || ||| || Sbjct 440 CATCTTAAG-GCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAA 382 Query 39856 GAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | || ||||||| | || ||||| | || || |||| | ||| |||||||| Sbjct 381 TA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | ||||||||||||||||| || || || || |||||||| | ||||||| | || Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTT 263 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | | |||| || | | || | ||||||| || || |||||| ||| |||| Sbjct 262 GAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAA 203 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGT 40091 | || || | || || |||| |||| || |||||||| || | || | | ||| | Sbjct 202 AGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAAT 143 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | ||||| ||| | ||| |||||||| || ||||| || ||||| || || || | Sbjct 142 GGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCT 83 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| | ||| || | | | ||||| || ||||| ||| ||||| | ||| |||| Sbjct 82 TGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTTT 23 Query 40212 TTG 40214 || Sbjct 22 CTG 20 >seq99321 Length=426 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||||||| ||||| ||| | |||||||| ||| |||||| ||||| | || Sbjct 19 AGCATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCA 78 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 ||||| || || ||| | ||| || |||||||| ||| ||| | |||||| Sbjct 79 CGAATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCC 138 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || || |||||||| || || |||||||| ||| |||| | |||||||||||| Sbjct 139 TTTAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 >seq66449 Length=274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||||||||| || || ||||||| | | ||| | ||| | | Sbjct 123 GTTCCAGCATTGAAGAGTGTAGGAGAAGCATGGGTGAACCGCCTCTGAGACATCAGGTGG 182 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| |||||||| || ||||| || ||||| || | || || | ||||||| Sbjct 183 TATGTTTTGATAGCTGACTCAATATCATCCTTGTGAATACCAACAGCCACTCTCATCAAC 242 Query 70111 ATATGCTGAGGTCGTTCTAC 70130 ||||| || ||||| || || Sbjct 243 ATATGTTGTGGTCGCTCCAC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685901276517600