Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7113 203 3e-47 >seq7113 Length=4078 Score = 203 bits (224), Expect = 3e-47 Identities = 580/878 (66%), Gaps = 31/878 (4%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| |||||||| | | | || ||| |||||||||| ||||| | ||||| || | Sbjct 44 TGTTTCCGATTCAATACCCTCAAATCTGGGAAATGTACAAGAAAGCTGAAGCGTCCTTCT 103 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTG---GATTGCATTAAAAC 43823 |||| ||||||||||||||| | | |||| || ||||| || | |||| Sbjct 104 GGACGGCAGAAGAAGTTGATCTTTCACAAGATCTACGCCATTGGGAGACATCTTTAACTT 163 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | ||| ||||||| || | ||| | || || |||||||| || || || | Sbjct 164 CCGATGAACAACATTTCATTACCCACGTTCTTGCTTTCTTTGCTGCTTCTGATGGTATTG 223 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | ||||||| | | || ||| || | |||| ||||| | | ||||| || | Sbjct 224 TTCTTGAAAATCTTGCTAATCGTTTCATGAAAGAGATTCAAGTCTCTGAAGCCCGTGCGT 283 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 |||| || || ||||| ||||| ||||| || ||||| |||||||| ||| || ||| Sbjct 284 TTTACGGCTTCCAAATCGCCATTGAAAACATCCATTCCGAAATGTATTCTCTCCTCTTAG 343 Query 44004 ATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 | || ||||| ||||| | | | | || || ||||| || ||| || |||||| | Sbjct 344 AAACCTACATAAAAGACTCTGTTCAAAAAACA-CGATTATTCCGTGCAATTGAAACAATC 402 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 ||| | || | ||||| ||||||||| | | |||||| || || | | Sbjct 403 CCTTGTGTAAAGAAGAAAGCCGACTGGGCCTTAAGATGGATCGATGGTGCCGAATNT--- 459 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGC 44181 ||| || | | || || || ||| ||||| |||||||| || ||| || ||| Sbjct 460 ---GAAAGATTAATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCCGGAAGTTTCTGC 516 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 | || || ||| | || ||||| || || ||||| || || || || ||||| || || Sbjct 517 -TCGATTTTCTGGCTTAAAAAACGCGGGTTAATGCCCGGATTAACATTCTCAAACGAATT 575 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301 ||| || |||||||| | ||||||||||| ||||| |||| | | | | Sbjct 576 AATCTCACGAGATGAAGGGCTTCATTGCGATTTCGCTTG---TTTAC-TCTACACCCTTC 631 Query 44302 AGACGATAAGCCTTCATGTAAGACA--ATTACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 || || || ||| | |||| | ||| || || || ||| ||||| | || Sbjct 632 TGAAGAAAAAGCTT-ACCCAAGAGAAGATTCAAGGGATCGTGAAAGATGCAGTTGAAATC 690 Query 44360 GAACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA---TGAAC 44414 ||| ||||| | || | ||| | || || |||| |||| ||||| ||| Sbjct 691 GAAAGGGAATTCGTCTGTGA--TGCACTGCCAGTCGCTTTAGTAGGTATGAACTGTGA-- 746 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 ||| |||| ||||| ||||||| |||| ||| | || | | ||| || || | Sbjct 747 -TTTAATGAGTCAATACATTGAATTTGTTGCTGATAGATTGTTGGGTGCACTTGGATGTG 805 Query 44475 ATAAACACTATATTGTACAAAACCCGTTTGATT-TTATGGAAAATATTTCGTTGGAAGGC 44533 | ||| ||| ||| ||| || ||||||| |||||| ||||| || |||| Sbjct 806 AGAAAGTTTATGGTGTTGCAAATCCTTTTGATTGNGATGGAATTGATTTCATTACAAGGG 865 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||||| || ||||| || | ||||| || ||||| Sbjct 866 AAAACAAATTTCTTTGAGAAGAGAGTTGGGGAGTATCA 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396887605626700