Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14764 98.7 8e-16 seq5800 89.7 4e-13 >seq14764 Length=84029 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| ||||||||| | | || | ||||| || || || || Sbjct 2784 GTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTGCTTTCCT 2843 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||| || ||||| || || | || ||||| || ||||||| |||| Sbjct 2844 GCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGTTTTG 2903 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | |||| ||||||| || ||||| ||||| || | || || || || ||| Sbjct 2904 ACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGTAAGGGTT 2963 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 2964 TTCACGAAGATTTGCAT 2980 >seq5800 Length=18681 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||||||| | | |||| | || || |||||||| || Sbjct 1930 GTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCA 1871 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||||||| || || || | || || || || |||||| | || Sbjct 1870 GCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTA 1811 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || || || |||||||| | |||||| || ||||| Sbjct 1810 ACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTC 1751 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 1750 TTGACGAAGATTTGCAT 1734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424326709282080