Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8005 131 2e-25 >seq8005 Length=94463 Score = 131 bits (144), Expect = 2e-25 Identities = 224/321 (70%), Gaps = 8/321 (2%) Strand=Plus/Minus Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTG 11557 |||||||| || |||| ||| | ||| || || | ||||||||||||||||| || Sbjct 12473 CGATTAGTTGCAGCAACAACAATAATACCGGTGTTTCCCTCAAAGCCATCCATCTCAGTC 12414 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGC 11615 || | ||||| | ||| |||||||| ||||||||| || | | | | |||| || | Sbjct 12413 AGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCAGTACCTC 12356 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 |||| | ||||| |||||||| ||||||| ||||||||||| || |||||| | Sbjct 12355 TTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAATACAAGGAGCATTTTCCTTTG 12296 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | | || || || || || || || || |||||||||||||| || ||||| | Sbjct 12295 CCTTCTTGAAAAGGTCACGCACTCTAGATGCTCCGACACCAACAAACATTTCAACAAATT 12236 Query 11736 TTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 || |||| | || || ||||| || | ||| || || || || || || Sbjct 12235 CTGAACCAGA--AATGGAGAAAAATGGAACGCCGGCTTCTCCAGCAATAGCCTTAGCTAG 12178 Query 11794 GAGGGTCTTTCCCGTACCTGG 11814 || |||||||| || ||||| Sbjct 12177 CAGAGTCTTTCCAGTTCCTGG 12157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627110834064000