Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8005 87.8 2e-12 >seq8005 Length=94463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||||||||||||||||||||| || ||||| | || ||||| | ||||||||| | Sbjct 12434 TCAAAGCCATCCATCTCAGTCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCC- 12376 Query 14210 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 | | | | || | || | |||| | || || || ||||||||||| | || || | Sbjct 12375 -TCCTCCAATTCCAGTACCTCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAA 12317 Query 14268 TACATGGTTGATTTT-CACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 |||| || ||||| | | | ||| ||| | || |||||||| || |||||| Sbjct 12316 TACAAGGAGCATTTTCCTTTGCCTTCTTGAAA-AGGTCACGCACTCTAGATGCTCCGACA 12258 Query 14327 CCCACAAACATCTCCACAAA 14346 || |||||||| || ||||| Sbjct 12257 CCAACAAACATTTCAACAAA 12238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617528110170400