Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8005 105 8e-18 >seq8005 Length=94463 Score = 105 bits (116), Expect = 8e-18 Identities = 225/325 (69%), Gaps = 16/325 (5%) Strand=Plus/Minus Query 9572 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9629 ||||| || || || | |||| |||||| |||||| | |||| ||||||||||| | Sbjct 12473 CGATTAGTTGCAGCAACAACAATAATACCGGTGTTTCCCT--CAAAGCCATCCATCTCAG 12416 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687 ||| ||| || || | || ||||| | ||||||||| || | | | | |||| || Sbjct 12415 TCAGAAGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCAGTACC 12358 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747 | |||| | ||||| |||||||| ||||||| ||||| || || || |||||| Sbjct 12357 TCTTTGCCTCCCCACTGCATCAATTTCATCAACAAAGACAATACAAGGAGCATTTTCCTT 12298 Query 9748 AG-CGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCAC 9804 | | ||| ||| || || || ||| || | || || |||||||||||||| || || Sbjct 12297 TGCCTTCTTGAAA-AGGTCACG--CACTCTAGATGCTCCGACACCAACAAACATTTCAAC 12241 Query 9805 AAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 9863 ||| | || | ||| || | || || || || | ||| || ||||| || | Sbjct 12240 AAATTCTGAACCAGAA-ATGGAGAAAAATGGAACGCCGGCTTCTCCAGCAATAGCCTTAG 12182 Query 9864 CGAGAAGAGTCTTACCCGTACCTGG 9888 | || |||||||| || || ||||| Sbjct 12181 CTAGCAGAGTCTTTCCAGTTCCTGG 12157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582405302221600