Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq18245 105 3e-18 seq1169 98.7 5e-16 >seq18245 Length=53001 Score = 105 bits (116), Expect = 3e-18 Identities = 136/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| |||||||| || || ||| | || ||||| || || |||| ||| | |||||| Sbjct 28681 CGTGTGCCAAACTGTCCTTTAGGCTTCAAAAAATTGATGTTATTTGCACCCAGAAAATTT 28622 Query 65147 TGAGCCATTCCGATAATTGCTGCATT-TAAACTCGCTTCACCGTGATGATATCCTGAATG 65205 || ||||| || | ||||| | | || || || |||||||| ||||| || | || | Sbjct 28621 TGTGCCATGCCAACAATTG-TACTTTGTATGCTGGCTTCACCATGATGGTAAGCAGATTT 28563 Query 65206 TTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAA 65265 || ||||| || ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 28562 CTCGGAGACGTAACCACTGAACTGAGCAACTTTGATTTCTTTTACCAAGTTTCTCTTAAA 28503 Query 65266 TGCAG 65270 |||| Sbjct 28502 AGCAG 28498 >seq1169 Length=11415 Score = 98.7 bits (108), Expect = 5e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| |||||||| || |||||| | | ||||| || || |||| ||| | | ||| Sbjct 6333 CGTGTGCCAAACTGTCCTTTTGGCTTCAGAAAATTGATGTTATTTGCACCCAGATGATTT 6274 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 || ||||| || ||||||| | || || |||||||| ||||| | | || | | Sbjct 6273 TGTGCCATGCCAATAATTGTACTCTGTATGCTGGCTTCACCATGATGGAAAGCAGATTTT 6214 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAAT 65266 ||||||||||| ||||| || ||||||| ||| || || || || || | ||||| Sbjct 6213 TCAGAGACATAACCACTGAACTGAGCAAATTTGATCTCTTTTACCAAGTTTCTCTTAAAA 6154 Query 65267 GCAG 65270 |||| Sbjct 6153 GCAG 6150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235342958451000